$,PathwayList-method	PathwayList-class
as.list.PathwayList	as.list.PathwayList
buildPathway	buildPathway
convertIdentifiers	convertIdentifiers
convertIdentifiers,Pathway-method	Pathway-class
convertIdentifiers,PathwayList-method	PathwayList-class
cytoscapePlot	cytoscapePlot
edges,Pathway,character-method	Pathway-class
edges,Pathway,missing-method	Pathway-class
length,PathwayList-method	PathwayList-class
names,PathwayList-method	PathwayList-class
nodes,Pathway-method	Pathway-class
Pathway-class	Pathway-class
pathwayDatabase	Pathway-class
pathwayDatabases	pathwayDatabases
pathwayGraph	pathwayGraph
pathwayId	Pathway-class
PathwayList-class	PathwayList-class
pathways	pathways
Pathways-class	Pathways-class
pathwaySpecies	Pathway-class
pathwayTimestamp	Pathway-class
pathwayTitle	Pathway-class
pathwayURL	Pathway-class
plot,Pathway,ANY-method	Pathway-class
prepareSPIA	prepareSPIA
prepareSPIA,list-method	prepareSPIA
prepareSPIA,PathwayList-method	PathwayList-class
runClipper	runClipper
runClipper,list-method	runClipper
runClipper,Pathway-method	Pathway-class
runClipper,PathwayList-method	PathwayList-class
runClipperMulti	runClipper
runSPIA	runSPIA
runTopologyGSA	runTopologyGSA
runTopologyGSA,list-method	runTopologyGSA
runTopologyGSA,Pathway-method	Pathway-class
runTopologyGSA,PathwayList-method	PathwayList-class
runTopologyGSAMulti	runTopologyGSA
[,PathwayList-method	PathwayList-class
[[,PathwayList-method	PathwayList-class
