Package: GOTHiC
Title: Binomial test for Hi-C data analysis
Description: This is a Hi-C analysis package using a cumulative
        binomial test to detect interactions between distal genomic
        loci that have significantly more reads than expected by chance
        in Hi-C experiments. It takes mapped paired NGS reads as input
        and gives back the list of significant interactions for a given
        bin size in the genome.
Version: 1.12.0
Date: 2013-06-07
Author: Borbala Mifsud and Robert Sugar
Maintainer: Borbala Mifsud <b.mifsud@qmul.ac.uk>
Depends: R (>= 2.15.1), methods, utils, GenomicRanges, Biostrings,
        BSgenome, data.table
Imports: BiocGenerics, S4Vectors (>= 0.9.38), IRanges, Rsamtools,
        ShortRead, rtracklayer, ggplot2
Suggests: HiCDataLymphoblast
Enhances: parallel
License: GPL-3
biocViews: Sequencing, Preprocessing, Epigenetics, HiC
NeedsCompilation: no
Packaged: 2017-04-24 23:39:05 UTC; biocbuild
Built: R 3.4.1; ; 2017-10-20 00:48:23 UTC; unix
