# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Tue May 12 04:50:18 2020
# ------------------------------------------------

package:
    name: bioconductor-globalancova
    version: 4.6.0
source:
    md5: 52375b62e0d109fa023618456a80ece6
    url:
        - https://bioarchive.galaxyproject.org/GlobalAncova_4.6.0.tar.gz
        - https://bioconductor.org/packages/3.11/bioc/src/contrib/GlobalAncova_4.6.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-globalancova/bioconductor-globalancova_4.6.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r40h037d062_0
requirements:
    build:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - binutils_impl_linux-64 2.34 h53a641e_0
        - binutils_linux-64 2.34 hc952b39_18
        - gcc_impl_linux-64 7.3.0 hd420e75_5
        - gcc_linux-64 7.3.0 h553295d_18
        - ld_impl_linux-64 2.34 h53a641e_0
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgomp 9.2.0 h24d8f2e_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - make 4.3 h516909a_0
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.34 h53a641e_0
        - binutils_linux-64 2.34 hc952b39_18
        - bioconductor-annotate 1.66.0 r40_0
        - bioconductor-annotationdbi 1.50.0 r40_0
        - bioconductor-biobase 2.48.0 r40h037d062_0
        - bioconductor-biocgenerics 0.34.0 r40_0
        - bioconductor-globaltest 5.42.0 r40_0
        - bioconductor-graph 1.66.0 r40h037d062_0
        - bioconductor-gseabase 1.50.0 r40_0
        - bioconductor-iranges 2.22.1 r40h037d062_0
        - bioconductor-s4vectors 0.26.0 r40h037d062_0
        - bwidget 1.9.14 0
        - bzip2 1.0.8 h516909a_2
        - ca-certificates 2020.4.5.1 hecc5488_0
        - cairo 1.16.0 hcf35c78_1003
        - certifi 2020.4.5.1 py38h32f6830_0
        - curl 7.69.1 h33f0ec9_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.1 he06d7ca_0
        - fribidi 1.0.9 h516909a_0
        - gcc_impl_linux-64 7.3.0 hd420e75_5
        - gcc_linux-64 7.3.0 h553295d_18
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_5
        - gfortran_linux-64 7.3.0 h553295d_18
        - glib 2.58.3 py38h73cb85d_1004
        - graphite2 1.3.13 he1b5a44_1001
        - gsl 2.6 h294904e_0
        - gxx_impl_linux-64 7.3.0 hdf63c60_5
        - gxx_linux-64 7.3.0 h553295d_18
        - harfbuzz 2.4.0 h9f30f68_3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - krb5 1.17.1 h2fd8d38_0
        - ld_impl_linux-64 2.34 h53a641e_0
        - libblas 3.8.0 8_h6e990d7_netlib
        - libcblas 3.8.0 8_h6e990d7_netlib
        - libcurl 7.69.1 hf7181ac_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1007
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgfortran-ng 7.3.0 hdf63c60_5
        - libgomp 9.2.0 h24d8f2e_2
        - libiconv 1.15 h516909a_1006
        - liblapack 3.8.0 8_h6e990d7_netlib
        - libpng 1.6.37 hed695b0_1
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - libtiff 4.1.0 hc7e4089_6
        - libuuid 2.32.1 h14c3975_1000
        - libwebp-base 1.1.0 h516909a_3
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 hee79883_0
        - lz4-c 1.9.2 he1b5a44_1
        - make 4.3 h516909a_0
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1g h516909a_0
        - pango 1.42.4 h7062337_4
        - pcre 8.44 he1b5a44_0
        - pcre2 10.34 h2f06484_0
        - pip 20.1 pyh9f0ad1d_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - python 3.8.2 he5300dc_7_cpython
        - python_abi 3.8 1_cp38
        - r-assertthat 0.2.1 r40h6115d3f_2
        - r-backports 1.1.6 r40hcdcec82_2
        - r-base 4.0.0 hdca8982_3
        - r-bit 1.1_15.2 r40hcdcec82_1
        - r-bit64 0.9_7 r40hcdcec82_1002
        - r-bitops 1.0_6 r40hcdcec82_1004
        - r-blob 1.2.1 r40h6115d3f_1
        - r-callr 3.4.3 r40h6115d3f_1
        - r-cli 2.0.2 r40h6115d3f_1
        - r-colorspace 1.4_1 r40hcdcec82_2
        - r-corpcor 1.6.9 r40h6115d3f_1003
        - r-crayon 1.3.4 r40h6115d3f_1003
        - r-dbi 1.1.0 r40h6115d3f_1
        - r-dendextend 1.13.4 r40h6115d3f_1
        - r-desc 1.2.0 r40h6115d3f_1003
        - r-digest 0.6.25 r40h0357c0b_2
        - r-ellipsis 0.3.0 r40hcdcec82_1
        - r-evaluate 0.14 r40h6115d3f_2
        - r-fansi 0.4.1 r40hcdcec82_1
        - r-farver 2.0.3 r40h0357c0b_1
        - r-ggplot2 3.3.0 r40h6115d3f_1
        - r-glue 1.4.0 r40hcdcec82_1
        - r-gridextra 2.3 r40h6115d3f_1003
        - r-gtable 0.3.0 r40h6115d3f_3
        - r-isoband 0.2.1 r40h0357c0b_1
        - r-labeling 0.3 r40h6115d3f_1003
        - r-lattice 0.20_41 r40hcdcec82_2
        - r-lifecycle 0.2.0 r40h6115d3f_1
        - r-magrittr 1.5 r40h6115d3f_1003
        - r-mass 7.3_51.6 r40hcdcec82_2
        - r-matrix 1.2_18 r40h7fa42b6_3
        - r-memoise 1.1.0 r40h6115d3f_1004
        - r-mgcv 1.8_31 r40h7fa42b6_1
        - r-munsell 0.5.0 r40h6115d3f_1003
        - r-nlme 3.1_147 r40h9bbef5b_1
        - r-pillar 1.4.4 r40h6115d3f_0
        - r-pkgbuild 1.0.8 r40h6115d3f_0
        - r-pkgconfig 2.0.3 r40h6115d3f_1
        - r-pkgload 1.0.2 r40h0357c0b_1002
        - r-plogr 0.2.0 r40h6115d3f_1003
        - r-praise 1.0.0 r40h6115d3f_1004
        - r-prettyunits 1.1.1 r40h6115d3f_1
        - r-processx 3.4.2 r40hcdcec82_1
        - r-ps 1.3.3 r40hcdcec82_0
        - r-r6 2.4.1 r40h6115d3f_1
        - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
        - r-rcpp 1.0.4.6 r40h0357c0b_1
        - r-rcurl 1.98_1.2 r40hcdcec82_1
        - r-rlang 0.4.6 r40hcdcec82_0
        - r-rprojroot 1.3_2 r40h6115d3f_1003
        - r-rsqlite 2.2.0 r40h0357c0b_2
        - r-rstudioapi 0.11 r40h6115d3f_1
        - r-scales 1.1.0 r40h6115d3f_1
        - r-survival 3.1_12 r40hcdcec82_1
        - r-testthat 2.3.2 r40h0357c0b_1
        - r-tibble 3.0.1 r40hcdcec82_1
        - r-utf8 1.1.4 r40hcdcec82_1003
        - r-vctrs 0.2.4 r40hcdcec82_1
        - r-vgam 1.1_3 r40h9bbef5b_1
        - r-viridis 0.5.1 r40h6115d3f_1004
        - r-viridislite 0.3.0 r40h6115d3f_1003
        - r-withr 2.2.0 r40h6115d3f_1
        - r-xml 3.99_0.3 r40hcdcec82_1
        - r-xtable 1.8_4 r40h6115d3f_3
        - r-zeallot 0.1.0 r40h6115d3f_1002
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - setuptools 46.2.0 py38h32f6830_0
        - sqlite 3.30.1 hcee41ef_0
        - tk 8.6.10 hed695b0_0
        - tktable 2.10 h555a92e_3
        - wheel 0.34.2 py_1
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.5 h516909a_0
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.4 h6597ccf_3
    run:
        - bioconductor-annotate >=1.66.0,<1.67.0
        - bioconductor-annotationdbi >=1.50.0,<1.51.0
        - bioconductor-biobase >=2.48.0,<2.49.0
        - bioconductor-globaltest >=5.42.0,<5.43.0
        - bioconductor-gseabase >=1.50.0,<1.51.0
        - libblas >=3.8.0,<4.0a0
        - libgcc-ng >=7.3.0
        - liblapack >=3.8.0,<3.9.0a0
        - r-base >=4.0,<4.1.0a0
        - r-corpcor
        - r-dendextend
        - r-vgam
test:
    commands:
        - $R -e "library('GlobalAncova')"
about:
    description: 'The association between a variable of interest (e.g. two groups)
        and the global pattern of a group of variables (e.g. a gene set) is tested
        via a global F-test. We give the following arguments in support of the GlobalAncova
        approach: After appropriate normalisation, gene-expression-data appear rather
        symmetrical and outliers are no real problem, so least squares should be rather
        robust. ANCOVA with interaction yields saturated data modelling e.g. different
        means per group and gene. Covariate adjustment can help to correct for possible
        selection bias. Variance homogeneity and uncorrelated residuals cannot be
        expected. Application of ordinary least squares gives unbiased, but no longer
        optimal estimates (Gauss-Markov-Aitken). Therefore, using the classical F-test
        is inappropriate, due to correlation. The test statistic however mirrors deviations
        from the null hypothesis. In combination with a permutation approach, empirical
        significance levels can be approximated. Alternatively, an approximation yields
        asymptotic p-values. The framework is generalized to groups of categorical
        variables or even mixed data by a likelihood ratio approach. Closed and hierarchical
        testing procedures are supported. This work was supported by the NGFN grant
        01 GR 0459, BMBF, Germany and BMBF grant 01ZX1309B, Germany.'
    home: https://bioconductor.org/packages/3.11/bioc/html/GlobalAncova.html
    license: GPL (>= 2)
    license_file: /opt/conda/conda-bld/bioconductor-globalancova_1589268382730/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/R/share/licenses/GPL-3
    summary: Global test for groups of variables via model comparisons
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:globalancova
        - doi:10.1093/bioinformatics/btm531
