GAGO                    Gene set testing of gene set databases using
                        GlobalAncova
GAhier                  Class '"GAhier"'
GlobalAncova            Global test for differential gene expression
GlobalAncova-methods    Methods for Function GlobalAncova
GlobalAncova.closed     Closed testing procedure for testing several
                        groups of genes using GlobalAncova
GlobalAncova.closed-methods
                        Methods for Function GlobalAncova.closed
GlobalAncova.decomp     GlobalAncova with sequential and type III sum
                        of squares decomposition and adjustment for
                        global covariates
Plot.all                Combined visualization of sequential
                        decomposition and influence of single genes on
                        the GlobalAncova statistic
Plot.features           Features Plot for generalized Global Ancova
Plot.genes              Genes Plot for Global Ancova
Plot.genes-methods      Methods for Function Plot.genes
Plot.sequential         Visualization of sequential decomposition
Plot.subjects           Subjects Plot for GlobalAncova
Plot.subjects-methods   Methods for Function Plot.subjects
bindata                 Simulated binary data
colon.normal            Gene expression data
colon.pheno             Covariate information for the colon data
colon.tumour            Gene expression data
gGlobalAncova           Generalized GlobalAncova group test
gGlobalAncova.hierarchical
                        Hierarchical testing procedure using
                        generalized GlobalAncova
pair.compare            Pairwise comparisons of factor levels within
                        GlobalAncova
pathways                Cancer related pathways
phenodata               Covariate information for the van t'Veer data
vantVeer                Gene expression data
