# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Oct 15 06:43:41 2018
# ------------------------------------------------

package:
    name: bioconductor-genomicalignments
    version: 1.16.0
source:
    sha256: 5c31ea7deaf17c3ea3a66fe41dfce754b5495f65a28be7860042ae392d13f102
    url:
        - http://bioconductor.org/packages/3.7/bioc/src/contrib/GenomicAlignments_1.16.0.tar.gz
        - https://bioarchive.galaxyproject.org/GenomicAlignments_1.16.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-genomicalignments/bioconductor-genomicalignments_1.16.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r341h470a237_0
requirements:
    build:
        - libgcc-ng 7.2.0 hdf63c60_3
        - make 4.2.1 h470a237_1002
        - toolchain 2.2.2 0
        - toolchain_c_linux-64 2.2.2 0
    host:
        - bioconductor-biobase 2.40.0 r341h470a237_0
        - bioconductor-biocgenerics 0.26.0 r341_0
        - bioconductor-biocparallel 1.14.2 r341h26a2512_0
        - bioconductor-biostrings 2.48.0 r341h470a237_0
        - bioconductor-delayedarray 0.6.6 r341_0
        - bioconductor-genomeinfodb 1.16.0 r341_0
        - bioconductor-genomeinfodbdata 1.1.0 r341_0
        - bioconductor-genomicranges 1.32.7 r341h470a237_0
        - bioconductor-iranges 2.14.12 r341h470a237_0
        - bioconductor-rsamtools 1.32.3 r341hfc679d8_0
        - bioconductor-s4vectors 0.18.3 r341h470a237_0
        - bioconductor-summarizedexperiment 1.10.1 r341_0
        - bioconductor-xvector 0.20.0 r341h470a237_0
        - bioconductor-zlibbioc 1.26.0 r341h470a237_0
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.8.24 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - fontconfig 2.13.1 h65d0f4c_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h5e8e0c9_1
        - glib 2.56.2 h464dc38_0
        - graphite2 1.3.12 hfc679d8_1
        - gsl 2.2.1 h0c605f7_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_5
        - libgcc-ng 7.2.0 hdf63c60_3
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_2
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - libtiff 4.0.9 he6b73bb_2
        - libuuid 2.32.1 h470a237_2
        - libxcb 1.13 h470a237_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - pthread-stubs 0.4 h470a237_1
        - r-base 3.4.1 h4fe35fd_8
        - r-bh 1.66.0_1 r341_1
        - r-bitops 1.0_6 r341hc070d10_2
        - r-formatr 1.5 r341h6115d3f_1
        - r-futile.logger 1.4.3 r341h6115d3f_1
        - r-futile.options 1.0.1 r341h6115d3f_0
        - r-lambda.r 1.2.3 r341h6115d3f_0
        - r-lattice 0.20_35 r341hc070d10_0
        - r-matrix 1.2_14 r341hc070d10_2
        - r-matrixstats 0.54.0 r341hc070d10_0
        - r-rcurl 1.95_4.11 r341h86b9717_2
        - r-snow 0.4_3 r341h6115d3f_0
        - readline 7.0 haf1bffa_1
        - tk 8.6.8 ha92aebf_0
        - wget 1.19.5 h1ad7b7a_0
        - xorg-kbproto 1.0.7 h470a237_2
        - xorg-libice 1.0.9 h470a237_4
        - xorg-libsm 1.2.3 h8c8a85c_0
        - xorg-libx11 1.6.6 h470a237_0
        - xorg-libxau 1.0.8 h470a237_6
        - xorg-libxdmcp 1.1.2 h470a237_7
        - xorg-libxext 1.3.3 h470a237_4
        - xorg-libxrender 0.9.10 h470a237_2
        - xorg-libxt 1.1.5 h470a237_2
        - xorg-renderproto 0.11.1 h470a237_2
        - xorg-xextproto 7.3.0 h470a237_2
        - xorg-xproto 7.0.31 h470a237_7
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-biocgenerics >=0.26.0,<0.28.0
        - bioconductor-biocparallel >=1.14.2,<1.16.0
        - bioconductor-biostrings >=2.48.0,<2.50.0
        - bioconductor-genomeinfodb >=1.16.0,<1.18.0
        - bioconductor-genomicranges >=1.32.7,<1.34.0
        - bioconductor-iranges >=2.14.12,<2.16.0
        - bioconductor-rsamtools >=1.32.3,<1.34.0
        - bioconductor-s4vectors >=0.18.3,<0.20.0
        - bioconductor-summarizedexperiment >=1.10.1,<1.12.0
        - libgcc-ng >=4.9
        - r-base >=3.4.1,<3.4.2.0a0
test:
    commands:
        - $R -e "library('GenomicAlignments')"
about:
    home: http://bioconductor.org/packages/3.7/bioc/html/GenomicAlignments.html
    license: Artistic-2.0
    summary: Provides efficient containers for storing and manipulating short genomic
        alignments (typically obtained by aligning short reads to a reference genome).
        This includes read counting, computing the coverage, junction detection, and
        working with the nucleotide content of the alignments.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:genomicalignments
