Package: GeneGeneInteR
Type: Package
Title: Tools for Testing Gene-Gene Interaction at the Gene Level
Version: 1.28.0
Description: The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results. <doi:10.18637/jss.v095.i12>.
Authors@R: c(person("Mathieu","Emily", email="mathieu.emily@agrocampus-ouest.fr",role=c("aut","cre")),person("Nicolas","Sounac",email="nsounac@agrocamspus-ouest.fr",role=c("ctb")),person("Florian","Kroell",email="florian.kroell@agrocampus-ouest.fr",role=c("ctb")),person("Magalie","Houee-Bigot",email="magalie.houee@agrocampus-ouest.fr",role=c("aut")))
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 4.0)
biocViews: GenomeWideAssociation, SNP, Genetics, GeneticVariability
Imports: snpStats, mvtnorm, Rsamtools, igraph, kernlab, FactoMineR,
        IRanges, GenomicRanges, data.table,grDevices, graphics,stats,
        utils, methods
git_url: https://git.bioconductor.org/packages/GeneGeneInteR
git_branch: RELEASE_3_18
git_last_commit: 5961a9f
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-24
NeedsCompilation: yes
Packaged: 2023-10-24 21:18:28 UTC; biocbuild
Author: Mathieu Emily [aut, cre],
  Nicolas Sounac [ctb],
  Florian Kroell [ctb],
  Magalie Houee-Bigot [aut]
Maintainer: Mathieu Emily <mathieu.emily@agrocampus-ouest.fr>
Built: R 4.3.2; x86_64-conda-linux-gnu; 2023-12-08 13:19:34 UTC; unix
