Package: geecc
Type: Package
Title: Gene Set Enrichment Analysis Extended to Contingency Cubes
Version: 1.18.0
Date: 2016-09-19
Author: Markus Boenn
Maintainer: Markus Boenn <markus.boenn@ufz.de>
Description: Use log-linear models to perform hypergeometric and chi-squared tests for gene set enrichments for two (based on contingency tables) or three categories (contingency cubes). Categories can be differentially expressed genes, GO terms, sequence length, GC content, chromosomal position, phylostrata, divergence-strata, ....
License: GPL (>= 2)
Depends: R (>= 3.3.0), methods
Imports: MASS, hypergea (>= 1.3.0), gplots, Rcpp (>= 0.11.3), graphics,
        stats, utils
LinkingTo: Rcpp
SystemRequirements: Rcpp
Suggests: hgu133plus2.db, GO.db, AnnotationDbi
biocViews: ImmunoOncology, BiologicalQuestion, GeneSetEnrichment,
        WorkflowStep, GO, StatisticalMethod, GeneExpression,
        Transcription, RNASeq, Microarray
git_url: https://git.bioconductor.org/packages/geecc
git_branch: RELEASE_3_9
git_last_commit: 0c27de6
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: yes
Packaged: 2019-05-03 01:08:37 UTC; biocbuild
Built: R 3.5.1; x86_64-conda_cos6-linux-gnu; 2019-05-11 00:15:45 UTC; unix
