Package: gdsfmt
Type: Package
Title: R Interface to CoreArray Genomic Data Structure (GDS) Files
Version: 1.22.0
Date: 2019-10-25
Depends: R (>= 2.15.0), methods
Suggests: parallel, digest, crayon, RUnit, knitr, BiocGenerics
Author: Xiuwen Zheng [aut, cre] (<https://orcid.org/0000-0002-1390-0708>),
        Stephanie Gogarten [ctb],
        Jean-loup Gailly and Mark Adler [ctb] (for the included zlib sources),
        Yann Collet [ctb] (for the included LZ4 sources),
        xz contributors [ctb] (for the included liblzma sources)
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>
Description: This package provides a high-level R interface to
        CoreArray Genomic Data Structure (GDS) data files, which are
        portable across platforms with hierarchical structure to
        store multiple scalable array-oriented data sets with metadata
        information. It is suited for large-scale datasets, especially
        for data which are much larger than the available random-access
        memory. The gdsfmt package offers the efficient operations
        specifically designed for integers of less than 8 bits, since
        a diploid genotype, like single-nucleotide polymorphism (SNP),
        usually occupies fewer bits than a byte.
        Data compression and decompression are available with relatively
        efficient random access. It is also allowed to read a GDS
        file in parallel with multiple R processes supported by the
        package parallel.
License: LGPL-3
Copyright: This package includes the sources of CoreArray C++ library
        written by Xiuwen Zheng (LGPL-3), zlib written by Jean-loup
        Gailly and Mark Adler (zlib license), LZ4 written by Yann
        Collet (simplified BSD), and liblzma written by Lasse Collin
        and other xz contributors (public domain).
VignetteBuilder: knitr
ByteCompile: TRUE
BugReports: http://github.com/zhengxwen/gdsfmt/issues
URL: http://corearray.sourceforge.net/,
        http://github.com/zhengxwen/gdsfmt
biocViews: Infrastructure, DataImport
git_url: https://git.bioconductor.org/packages/gdsfmt
git_branch: RELEASE_3_10
git_last_commit: d1a0ec9
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: yes
Packaged: 2019-10-30 01:20:23 UTC; biocbuild
Built: R 3.6.1; x86_64-conda_cos6-linux-gnu; 2019-11-01 11:30:52 UTC; unix
