Package: gdsfmt
Type: Package
Title: R Interface to CoreArray Genomic Data Structure (GDS) Files
Version: 1.16.0
Date: 2018-04-15
Depends: R (>= 2.15.0), methods
Suggests: parallel, digest, crayon, RUnit, knitr, BiocGenerics
Author: Xiuwen Zheng [aut, cre], Stephanie Gogarten [ctb], Jean-loup
        Gailly and Mark Adler [ctb] (for the included zlib sources),
        Yann Collet [ctb] (for the included LZ4 sources),
        xz contributors (for the included liblzma sources)
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>
Description: This package provides a high-level R interface to
        CoreArray Genomic Data Structure (GDS) data files, which are
        portable across platforms with hierarchical structure to
        store multiple scalable array-oriented data sets with metadata
        information. It is suited for large-scale datasets, especially
        for data which are much larger than the available random-access
        memory. The gdsfmt package offers the efficient operations
        specifically designed for integers of less than 8 bits, since
        a diploid genotype, like single-nucleotide polymorphism (SNP),
        usually occupies fewer bits than a byte.
        Data compression and decompression are available with relatively
        efficient random access. It is also allowed to read a GDS
        file in parallel with multiple R processes supported by the
        package parallel.
License: LGPL-3
Copyright: This package includes the sources of CoreArray C++ library
        written by Xiuwen Zheng (LGPL-3), zlib written by Jean-loup
        Gailly and Mark Adler (zlib license), LZ4 written by Yann
        Collet (simplified BSD), and liblzma written by Lasse Collin
        and other xz contributors (public domain).
VignetteBuilder: knitr
ByteCompile: TRUE
BugReports: http://github.com/zhengxwen/gdsfmt/issues
URL: http://corearray.sourceforge.net/,
        http://github.com/zhengxwen/gdsfmt
biocViews: Software, Infrastructure, DataImport
NeedsCompilation: yes
Packaged: 2018-05-01 00:20:24 UTC; biocbuild
Built: R 3.5.1; x86_64-pc-linux-gnu; 2018-10-16 20:10:19 UTC; unix
