# Generated by roxygen2 (4.0.2): do not edit by hand

export(FourC)
export(addFragments)
export(addPeaks)
export(addViewpointFrags)
export(combineFragEnds)
export(countFragmentOverlaps)
export(countFragmentOverlapsSecondCutter)
export(distFitMonotone)
export(distFitMonotoneSymmetric)
export(findViewpointFragments)
export(getAllResults)
export(getDifferences)
export(getDistAroundVp)
export(getNormalizationFactors)
export(getReferenceSeq)
export(getZScores)
export(normalizeRPM)
export(plotDifferences)
export(plotFits)
export(plotNormalizationFactors)
export(plotScatter)
export(plotZScores)
export(smoothCounts)
export(smoothHitPerCent)
export(writeTrackFiles)
exportClasses(FourC)
exportMethods(updateObject)
import(Biobase)
import(Biostrings)
import(DESeq2)
import(GenomicAlignments)
import(GenomicRanges)
import(LSD)
import(Matrix)
import(Rsamtools)
import(SummarizedExperiment)
import(fda)
import(ggbio)
import(reshape2)
import(rtracklayer)
import(splines)
importFrom(gtools,combinations)
