# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Oct 26 20:47:41 2018
# ------------------------------------------------

package:
    name: bioconductor-fourcseq
    version: 1.14.0
source:
    sha256: 662cc98cd7609dfbd5a27abb608a0b9e860d3a255bb70657ce1bce8f5167802c
    url:
        - http://bioconductor.org/packages/3.7/bioc/src/contrib/FourCSeq_1.14.0.tar.gz
        - https://bioarchive.galaxyproject.org/FourCSeq_1.14.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-fourcseq/bioconductor-fourcseq_1.14.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351_0
requirements:
    host:
        - bioconductor-annotate 1.58.0 r351_0
        - bioconductor-annotationdbi 1.42.1 r351_0
        - bioconductor-annotationfilter 1.4.0 r351_0
        - bioconductor-biobase 2.40.0 r351h470a237_0
        - bioconductor-biocgenerics 0.26.0 r351_0
        - bioconductor-biocinstaller 1.30.0 r351_0
        - bioconductor-biocparallel 1.14.2 r351h26a2512_0
        - bioconductor-biomart 2.36.1 r351_0
        - bioconductor-biostrings 2.48.0 r351h470a237_0
        - bioconductor-biovizbase 1.28.2 r351h470a237_0
        - bioconductor-bsgenome 1.48.0 r351_0
        - bioconductor-delayedarray 0.6.6 r351_0
        - bioconductor-deseq2 1.20.0 r351hfc679d8_0
        - bioconductor-ensembldb 2.4.1 r351_0
        - bioconductor-genefilter 1.62.0 r351h26a2512_0
        - bioconductor-geneplotter 1.58.0 r351_0
        - bioconductor-genomeinfodb 1.16.0 r351_0
        - bioconductor-genomeinfodbdata 1.1.0 r351_0
        - bioconductor-genomicalignments 1.16.0 r351h470a237_0
        - bioconductor-genomicfeatures 1.32.3 r351_0
        - bioconductor-genomicranges 1.32.7 r351h470a237_0
        - bioconductor-ggbio 1.28.5 r351_0
        - bioconductor-graph 1.58.2 r351h470a237_0
        - bioconductor-iranges 2.14.12 r351h470a237_0
        - bioconductor-organismdbi 1.22.0 r351_0
        - bioconductor-protgenerics 1.12.0 r351_0
        - bioconductor-rbgl 1.56.0 r351hfc679d8_0
        - bioconductor-rsamtools 1.32.3 r351hfc679d8_0
        - bioconductor-rtracklayer 1.40.6 r351h470a237_0
        - bioconductor-s4vectors 0.18.3 r351h470a237_0
        - bioconductor-summarizedexperiment 1.10.1 r351_0
        - bioconductor-variantannotation 1.26.1 r351h470a237_0
        - bioconductor-xvector 0.20.0 r351h470a237_0
        - bioconductor-zlibbioc 1.26.0 r351h470a237_0
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - fontconfig 2.13.1 h65d0f4c_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h5e8e0c9_1
        - glib 2.56.2 h464dc38_0
        - graphite2 1.3.12 hfc679d8_1
        - gsl 2.2.1 h0c605f7_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_5
        - libgcc-ng 7.2.0 hdf63c60_3
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_2
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - libtiff 4.0.9 he6b73bb_2
        - libuuid 2.32.1 h470a237_2
        - libxcb 1.13 h470a237_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - pthread-stubs 0.4 h470a237_1
        - r-acepack 1.4.1 r351h364d78e_2
        - r-assertthat 0.2.0 r351h6115d3f_1
        - r-backports 1.1.2 r351hc070d10_1
        - r-base 3.5.1 h4fe35fd_1
        - r-base64enc 0.1_3 r351hc070d10_2
        - r-bh 1.66.0_1 r351_1
        - r-bit 1.1_12 r351h470a237_2
        - r-bit64 0.9_7 r351hc070d10_0
        - r-bitops 1.0_6 r351hc070d10_2
        - r-blob 1.1.1 r351_1
        - r-checkmate 1.8.5 r351hc070d10_2
        - r-cli 1.0.0 r351h6115d3f_1
        - r-cluster 2.0.7_1 r351h364d78e_0
        - r-colorspace 1.3_2 r351hc070d10_2
        - r-crayon 1.3.4 r351h6115d3f_1
        - r-curl 3.2 r351hc070d10_2
        - r-data.table 1.11.4 r351hc070d10_2
        - r-dbi 1.0.0 r351h6115d3f_1
        - r-dichromat 2.0_0 r351h6115d3f_4
        - r-digest 0.6.18 r351hc070d10_0
        - r-evaluate 0.11 r351h6115d3f_0
        - r-fansi 0.3.0 r351hc070d10_0
        - r-fda 2.4.8 r351_1
        - r-foreign 0.8_71 r351hc070d10_2
        - r-formatr 1.5 r351h6115d3f_1
        - r-formula 1.2_3 r351h6115d3f_1
        - r-futile.logger 1.4.3 r351h6115d3f_1
        - r-futile.options 1.0.1 r351h6115d3f_0
        - r-ggally 1.4.0 r351h6115d3f_0
        - r-ggplot2 3.1.0 r351h6115d3f_0
        - r-glue 1.3.0 r351h470a237_2
        - r-gridextra 2.3 r351h6115d3f_1
        - r-gtable 0.2.0 r351h6115d3f_1
        - r-gtools 3.8.1 r351hc070d10_2
        - r-highr 0.7 r351h6115d3f_1
        - r-hmisc 4.1_1 r351h364d78e_1
        - r-hms 0.4.2 r351h6115d3f_0
        - r-htmltable 1.12 r351h6115d3f_0
        - r-htmltools 0.3.6 r351hfc679d8_2
        - r-htmlwidgets 1.2 r351h6115d3f_0
        - r-httr 1.3.1 r351h6115d3f_1
        - r-jsonlite 1.5 r351hc070d10_2
        - r-knitr 1.20 r351h6115d3f_1
        - r-labeling 0.3 r351h6115d3f_1
        - r-lambda.r 1.2.3 r351h6115d3f_0
        - r-lattice 0.20_35 r351hc070d10_0
        - r-latticeextra 0.6_28 r351h6115d3f_1
        - r-lazyeval 0.2.1 r351hc070d10_2
        - r-locfit 1.5_9.1 r351h470a237_2
        - r-lsd 3.0 r351_1
        - r-magrittr 1.5 r351h6115d3f_1
        - r-markdown 0.8 r351hc070d10_3
        - r-mass 7.3_50 r351hc070d10_2
        - r-matrix 1.2_14 r351hc070d10_2
        - r-matrixstats 0.54.0 r351hc070d10_0
        - r-memoise 1.1.0 r351h6115d3f_1
        - r-mgcv 1.8_24 r351hc070d10_2
        - r-mime 0.5 r351hc070d10_2
        - r-munsell 0.5.0 r351h6115d3f_1
        - r-nlme 3.1_137 r351h364d78e_0
        - r-nnet 7.3_12 r351hc070d10_2
        - r-openssl 1.0.2 r351h9f97512_0
        - r-pillar 1.3.0 r351h6115d3f_0
        - r-pkgconfig 2.0.2 r351h6115d3f_1
        - r-plogr 0.2.0 r351h6115d3f_1
        - r-plyr 1.8.4 r351h9d2a408_2
        - r-prettyunits 1.0.2 r351h6115d3f_1
        - r-progress 1.2.0 r351h6115d3f_2
        - r-r6 2.2.2 r351h6115d3f_1
        - r-rcolorbrewer 1.1_2 r351h6115d3f_1
        - r-rcpp 0.12.17 r351h9d2a408_2
        - r-rcpparmadillo 0.9.100.5.0 r351h9d2a408_0
        - r-rcurl 1.95_4.11 r351h86b9717_2
        - r-reshape 0.8.7 r351hc070d10_2
        - r-reshape2 1.4.3 r351h9d2a408_2
        - r-rlang 0.3.0.1 r351h470a237_0
        - r-rpart 4.1_13 r351hc070d10_2
        - r-rsqlite 2.1.1 r351h9d2a408_0
        - r-rstudioapi 0.7 r351h6115d3f_1
        - r-scales 1.0.0 r351h9d2a408_1
        - r-snow 0.4_3 r351h6115d3f_0
        - r-stringi 1.2.4 r351h9d2a408_1
        - r-stringr 1.3.1 r351h6115d3f_1
        - r-survival 2.42_6 r351hc070d10_1
        - r-tibble 1.4.2 r351hc070d10_2
        - r-utf8 1.1.4 r351hc070d10_0
        - r-viridis 0.5.1 r351h6115d3f_1
        - r-viridislite 0.3.0 r351h6115d3f_1
        - r-withr 2.1.2 r351h6115d3f_0
        - r-xml 3.98_1.16 r351hc070d10_0
        - r-xtable 1.8_3 r351_0
        - r-yaml 2.2.0 r351hc070d10_1
        - readline 7.0 haf1bffa_1
        - tk 8.6.8 ha92aebf_0
        - wget 1.19.5 h1ad7b7a_0
        - xorg-kbproto 1.0.7 h470a237_2
        - xorg-libice 1.0.9 h470a237_4
        - xorg-libsm 1.2.3 h8c8a85c_0
        - xorg-libx11 1.6.6 h470a237_0
        - xorg-libxau 1.0.8 h470a237_6
        - xorg-libxdmcp 1.1.2 h470a237_7
        - xorg-libxext 1.3.3 h470a237_4
        - xorg-libxrender 0.9.10 h470a237_2
        - xorg-libxt 1.1.5 h470a237_2
        - xorg-renderproto 0.11.1 h470a237_2
        - xorg-xextproto 7.3.0 h470a237_2
        - xorg-xproto 7.0.31 h470a237_7
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-biobase >=2.40.0,<2.42.0
        - bioconductor-biostrings >=2.48.0,<2.50.0
        - bioconductor-deseq2 >=1.20.0,<1.22.0
        - bioconductor-genomicalignments >=1.16.0,<1.18.0
        - bioconductor-genomicranges >=1.32.7,<1.34.0
        - bioconductor-ggbio >=1.28.5,<1.30.0
        - bioconductor-rsamtools >=1.32.3,<1.34.0
        - bioconductor-rtracklayer >=1.40.6,<1.42.0
        - bioconductor-summarizedexperiment >=1.10.1,<1.12.0
        - r-base >=3.5.1,<3.5.2.0a0
        - r-fda
        - r-ggplot2
        - r-gtools
        - r-lsd
        - r-matrix
        - r-reshape2
test:
    commands:
        - $R -e "library('FourCSeq')"
about:
    home: http://bioconductor.org/packages/3.7/bioc/html/FourCSeq.html
    license: GPL (>= 3)
    summary: FourCSeq is an R package dedicated to the analysis of (multiplexed) 4C
        sequencing data. The package provides a pipeline to detect specific interactions
        between DNA elements and identify differential interactions between conditions.
        The statistical analysis in R starts with individual bam files for each sample
        as inputs. To obtain these files, the package contains a python script (extdata/python/demultiplex.py)
        to demultiplex libraries and trim off primer sequences. With a standard alignment
        software the required bam files can be then be generated.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:fourcseq
