# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Feb 26 07:50:45 2022
# ------------------------------------------------

package:
  name: bioconductor-flowworkspace
  version: 4.6.0
source:
  md5: 66150421e69941e2730b8a2c997b46a0
  url:
    - https://bioarchive.galaxyproject.org/flowWorkspace_4.6.0.tar.gz
    - https://bioconductor.org/packages/3.14/bioc/src/contrib/flowWorkspace_4.6.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-flowworkspace/bioconductor-flowworkspace_4.6.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41h619a076_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_6
    - gcc_impl_linux-64 10.3.0 hf2f2afa_12
    - gcc_linux-64 10.3.0 hc39de41_6
    - gxx_impl_linux-64 10.3.0 hf2f2afa_12
    - gxx_linux-64 10.3.0 h2593f52_6
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 10.3.0 he6cfe16_12
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgomp 11.2.0 h1d223b6_12
    - libsanitizer 10.3.0 h26c7422_12
    - libstdcxx-devel_linux-64 10.3.0 he6cfe16_12
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_6
    - bioconductor-biobase 2.54.0 r41h5c21468_1
    - bioconductor-biocgenerics 0.40.0 r41hdfd78af_0
    - bioconductor-cytolib 2.6.2 r41h619a076_0
    - bioconductor-delayedarray 0.20.0 r41hd029910_0
    - bioconductor-flowcore 2.6.0 r41h619a076_1
    - bioconductor-graph 1.72.0 r41h5c21468_1
    - bioconductor-iranges 2.28.0 r41h5c21468_1
    - bioconductor-matrixgenerics 1.6.0 r41hdfd78af_0
    - bioconductor-ncdfflow 2.40.0 r41h619a076_1
    - bioconductor-rbgl 1.70.0 r41h619a076_1
    - bioconductor-rgraphviz 2.38.0 r41h619a076_1
    - bioconductor-rhdf5lib 1.16.0 r41h5c21468_1
    - bioconductor-rprotobuflib 2.6.0 r41h619a076_1
    - bioconductor-s4vectors 0.32.3 r41h5c21468_0
    - bioconductor-zlibbioc 1.40.0 r41h5c21468_1
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2021.10.8 ha878542_0
    - cairo 1.16.0 ha00ac49_1009
    - curl 7.81.0 h494985f_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.96 ha180cfb_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.4.0 h03d3576_12
    - gcc_linux-64 9.4.0 h391b98a_6
    - gettext 0.19.8.1 h73d1719_1008
    - gfortran_impl_linux-64 9.4.0 h0003116_12
    - gfortran_linux-64 9.4.0 hf0ab688_6
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 9.4.0 h03d3576_12
    - gxx_linux-64 9.4.0 h0316aca_6
    - harfbuzz 3.4.0 hb4a5f5f_0
    - icu 69.1 h9c3ff4c_0
    - jbig 2.1 h7f98852_2003
    - jpeg 9e h7f98852_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - krb5 1.19.2 h48eae69_3
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - lerc 3.0 h9c3ff4c_0
    - libblas 3.8.0 11_h86c2bf4_netlib
    - libcblas 3.8.0 11_h86c2bf4_netlib
    - libcurl 7.81.0 h494985f_0
    - libdeflate 1.10 h7f98852_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 9.4.0 hd854feb_12
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgfortran-ng 11.2.0 h69a702a_12
    - libgfortran5 11.2.0 h5c6108e_12
    - libglib 2.70.2 h174f98d_4
    - libgomp 11.2.0 h1d223b6_12
    - libiconv 1.16 h516909a_0
    - liblapack 3.8.0 11_h86c2bf4_netlib
    - libnghttp2 1.47.0 he49606f_0
    - libpng 1.6.37 h21135ba_2
    - libsanitizer 9.4.0 h79bfe98_12
    - libssh2 1.10.0 ha35d2d1_2
    - libstdcxx-devel_linux-64 9.4.0 hd854feb_12
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - libtiff 4.3.0 h542a066_3
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.2 h7f98852_1
    - libxcb 1.13 h7f98852_1004
    - libxml2 2.9.12 h885dcf4_1
    - libzlib 1.2.11 h36c2ea0_1013
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 3.0.0 h7f98852_2
    - pango 1.50.3 h9967ed3_0
    - pcre 8.45 h9c3ff4c_0
    - pcre2 10.37 h032f7d1_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-askpass 1.1 r41hcfec24a_2
    - r-assertthat 0.2.1 r41hc72bb7e_2
    - r-aws.s3 0.3.21 r41hc72bb7e_1
    - r-aws.signature 0.6.0 r41hc72bb7e_0
    - r-backports 1.4.1 r41hcfec24a_0
    - r-base 4.1.2 h2553ce4_1
    - r-base64enc 0.1_3 r41hcfec24a_1004
    - r-bh 1.78.0_0 r41hc72bb7e_0
    - r-brio 1.1.3 r41hcfec24a_0
    - r-callr 3.7.0 r41hc72bb7e_0
    - r-cli 3.2.0 r41h03ef668_0
    - r-colorspace 2.0_3 r41h06615bd_0
    - r-crayon 1.5.0 r41hc72bb7e_0
    - r-curl 4.3.2 r41hcfec24a_0
    - r-data.table 1.14.2 r41hcfec24a_0
    - r-desc 1.4.0 r41hc72bb7e_0
    - r-diffobj 0.3.5 r41hcfec24a_0
    - r-digest 0.6.29 r41h03ef668_0
    - r-dplyr 1.0.7 r41h03ef668_0
    - r-ellipsis 0.3.2 r41hcfec24a_0
    - r-evaluate 0.15 r41hc72bb7e_0
    - r-fansi 1.0.2 r41hcfec24a_0
    - r-farver 2.1.0 r41h03ef668_0
    - r-generics 0.1.2 r41hc72bb7e_0
    - r-ggplot2 3.3.5 r41hc72bb7e_0
    - r-glue 1.6.2 r41h06615bd_0
    - r-gtable 0.3.0 r41hc72bb7e_3
    - r-httr 1.4.2 r41hc72bb7e_0
    - r-isoband 0.2.5 r41h03ef668_0
    - r-jpeg 0.1_9 r41hcfec24a_0
    - r-jsonlite 1.8.0 r41h06615bd_0
    - r-labeling 0.4.2 r41hc72bb7e_1
    - r-lattice 0.20_45 r41hcfec24a_0
    - r-latticeextra 0.6_29 r41hc72bb7e_1
    - r-lifecycle 1.0.1 r41hc72bb7e_0
    - r-magrittr 2.0.2 r41hcfec24a_0
    - r-mass 7.3_55 r41hcfec24a_0
    - r-matrix 1.4_0 r41he454529_0
    - r-matrixstats 0.61.0 r41hcfec24a_0
    - r-mgcv 1.8_39 r41h0154571_0
    - r-mime 0.12 r41hcfec24a_0
    - r-munsell 0.5.0 r41hc72bb7e_1004
    - r-nlme 3.1_155 r41h859d828_0
    - r-openssl 1.4.6 r41he82ab30_0
    - r-pillar 1.7.0 r41hc72bb7e_0
    - r-pkgconfig 2.0.3 r41hc72bb7e_1
    - r-pkgload 1.2.4 r41h03ef668_0
    - r-png 0.1_7 r41hcfec24a_1004
    - r-praise 1.0.0 r41hc72bb7e_1005
    - r-processx 3.5.2 r41hcfec24a_0
    - r-ps 1.6.0 r41hcfec24a_0
    - r-purrr 0.3.4 r41hcfec24a_1
    - r-r6 2.5.1 r41hc72bb7e_0
    - r-rcolorbrewer 1.1_2 r41h785f33e_1003
    - r-rcpp 1.0.8 r41h03ef668_0
    - r-rcpparmadillo 0.10.8.1.0 r41h306847c_0
    - r-rcppparallel 5.1.5 r41h03ef668_0
    - r-rematch2 2.1.2 r41hc72bb7e_1
    - r-rlang 0.4.12 r41hcfec24a_0
    - r-rprojroot 2.0.2 r41hc72bb7e_0
    - r-rstudioapi 0.13 r41hc72bb7e_0
    - r-scales 1.1.1 r41hc72bb7e_0
    - r-sys 3.4 r41hcfec24a_0
    - r-testthat 3.1.2 r41h03ef668_0
    - r-tibble 3.1.6 r41hcfec24a_0
    - r-tidyselect 1.1.1 r41hc72bb7e_0
    - r-utf8 1.2.2 r41hcfec24a_0
    - r-vctrs 0.3.8 r41hcfec24a_1
    - r-viridislite 0.4.0 r41hc72bb7e_0
    - r-waldo 0.3.1 r41hc72bb7e_0
    - r-withr 2.4.3 r41hc72bb7e_0
    - r-xml 3.99_0.9 r41h06615bd_0
    - r-xml2 1.3.3 r41h03ef668_0
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.2 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
    - zstd 1.5.2 ha95c52a_0
  run:
    - bioconductor-biobase >=2.54.0,<2.55.0
    - bioconductor-biocgenerics >=0.40.0,<0.41.0
    - bioconductor-cytolib >=2.6.0,<2.7.0
    - bioconductor-delayedarray >=0.20.0,<0.21.0
    - bioconductor-flowcore >=2.6.0,<2.7.0
    - bioconductor-graph >=1.72.0,<1.73.0
    - bioconductor-ncdfflow >=2.40.0,<2.41.0
    - bioconductor-rbgl >=1.70.0,<1.71.0
    - bioconductor-rgraphviz >=2.38.0,<2.39.0
    - bioconductor-rhdf5lib >=1.16.0,<1.17.0
    - bioconductor-rprotobuflib >=2.6.0,<2.7.0
    - bioconductor-s4vectors >=0.32.0,<0.33.0
    - libblas >=3.8.0,<4.0a0
    - libgcc-ng >=10.3.0
    - liblapack >=3.8.0,<4.0a0
    - libstdcxx-ng >=10.3.0
    - r-aws.s3
    - r-aws.signature
    - r-base >=4.1,<4.2.0a0
    - r-bh >=1.62.0-1
    - r-data.table
    - r-digest
    - r-dplyr
    - r-ggplot2
    - r-lattice
    - r-latticeextra
    - r-matrixstats
    - r-rcpp
    - r-rcpparmadillo
    - r-rcppparallel >=4.4.2-1
    - r-scales
    - r-xml
test:
  commands:
    - $R -e "library('flowWorkspace')"
about:
  description: This package is designed to facilitate comparison of automated gating
    methods against manual gating done in flowJo. This package allows you to import
    basic flowJo workspaces into BioConductor and replicate the gating from flowJo
    using the flowCore functionality. Gating hierarchies, groups of samples, compensation,
    and transformation are performed so that the output matches the flowJo analysis.
  home: https://bioconductor.org/packages/3.14/bioc/html/flowWorkspace.html
  license: file LICENSE
  license_file: LICENSE
  summary: Infrastructure for representing and interacting with gated and ungated
    cytometry data sets.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:flowworkspace
    - doi:10.1186/1471-2105-13-252
