flowWorkspace-package	flowWorkspace-package
add	gs_pop_add
add,default-method	gs_pop_add
asinhtGml2_trans	asinhtGml2_trans
asinh_Gml2	asinh_Gml2
booleanFilter	booleanFilter-class
booleanFilter-class	booleanFilter-class
brackets	brackets
cf_append_cols	cf_append_cols
cf_backend_type	cf_backend_type
cf_cleanup	cleanup
cf_cleanup_temp	cleanup_temp
cf_flush_meta	load_meta
cf_get_h5_file_path	cf_get_uri
cf_get_uri	cf_get_uri
cf_is_subsetted	is_subsetted
cf_keyword_delete	keyword-mutators
cf_keyword_insert	keyword-mutators
cf_keyword_rename	keyword-mutators
cf_keyword_set	keyword-mutators
cf_load_meta	load_meta
cf_lock	lock
cf_rename_channel	cytoframe-labels
cf_rename_marker	cytoframe-labels
cf_swap_colnames	cytoframe-labels
cf_unlock	lock
cf_write_disk	cf_write_disk
cf_write_h5	cf_write_h5
char2booleanFilter	booleanFilter-class
checkRedundantNodes	gs_check_redundant_nodes
cleanup	cleanup
cleanup_temp	cleanup_temp
colnames,cytoframe-method	markernames
colnames,cytoset-method	markernames
colnames,GatingHierarchy-method	markernames
colnames,GatingSet-method	markernames
colnames<-,cytoframe-method	markernames
colnames<-,cytoset-method	markernames
colnames<-,GatingHierarchy-method	markernames
colnames<-,GatingSet,ANY-method	markernames
colnames<-,GatingSet-method	markernames
compensate	compensate
compensate,cytoframe,matrix-method	compensate
compensate,cytoset,ANY-method	compensate
compensate,cytoset,list-method	compensate
compensate,cytoset,matrix-method	compensate
compensate,GatingSet,ANY-method	compensate
compensate,GatingSetList,ANY-method	compensate
convert	convert
convert_backend	convert_backend
convert_legacy_gs	convert_legacy
convert_legacy_gslist	convert_legacy
copyNode	gh_copy_gate
cs_add_cytoframe	cs_add_cytoframe
cs_cleanup	cleanup
cs_cleanup_temp	cleanup_temp
cs_flush_meta	load_meta
cs_get_cytoframe	cytoset
cs_get_h5_file_path	cs_get_uri
cs_get_uri	cs_get_uri
cs_is_subsetted	is_subsetted
cs_keyword_delete	keyword-mutators
cs_keyword_insert	keyword-mutators
cs_keyword_rename	keyword-mutators
cs_keyword_set	keyword-mutators
cs_load_meta	load_meta
cs_lock	lock
cs_set_cytoframe	cs_set_cytoframe
cs_swap_colnames	cytoframe-labels
cs_unlock	lock
cytoframe	cytoframe
cytoframe-class	cytoframe
cytoframe-labels	cytoframe-labels
cytoframe_to_flowFrame	convert
cytoset	cytoset
cytoset-class	cytoset
cytoset_to_flowSet	convert
cytoset_to_list	convert
delete_gs	delete_gs
dropRedundantChannels	gs_remove_redundant_channels
dropRedundantNodes	gs_remove_redundant_nodes
estimateLogicle	estimateLogicle
estimateLogicle,GatingHierarchy-method	estimateLogicle
estimateLogicle,GatingSet-method	estimateLogicle
estimateLogicle.GatingHierarchy	estimateLogicle
extract_cluster_pop_name_from_node	extract_cluster_pop_name_from_node
filterObject	filter_to_list
filterObject,default-method	filter_to_list
filter_to_list	filter_to_list
filter_to_list,booleanFilter-method	filter_to_list
filter_to_list,ellipsoidGate-method	filter_to_list
filter_to_list,logical-method	filter_to_list
filter_to_list,polygonGate-method	filter_to_list
filter_to_list,quadGate-method	filter_to_list
filter_to_list,rectangleGate-method	filter_to_list
flowData	gs_cyto_data
flowData,GatingSet-method	gs_cyto_data
flowData<-	gs_cyto_data
flowData<-,GatingSet-method	gs_cyto_data
flowFrame_to_cytoframe	convert
flowJo.fasinh	flowjo_fasinh
flowJo.flog	flowjo_log_trans
flowJo.fsinh	flowjo_fasinh
flowJoTrans	flowjo_biexp
flowjo_biexp	flowjo_biexp
flowJo_biexp_trans	flowjo_biexp_trans
flowjo_biexp_trans	flowjo_biexp_trans
flowjo_fasinh	flowjo_fasinh
flowJo_fasinh_trans	flowjo_fasinh_trans
flowjo_fasinh_trans	flowjo_fasinh_trans
flowjo_flog	flowjo_log_trans
flowjo_fsinh	flowjo_fasinh
flowjo_log_trans	flowjo_log_trans
flowSet_to_cytoset	convert
flowSet_to_list	convert
flowWorkspace	flowWorkspace-package
flowWorkspace-deprecated	flowWorkspace-deprecated
flow_breaks	flow_breaks
flow_trans	flow_trans
flush_meta	load_meta
GatingHierarchy	GatingHierarchy-class
GatingHierarchy-class	GatingHierarchy-class
GatingSet	GatingSet-class
GatingSet,cytoset,ANY-method	GatingSet-methods
GatingSet,flowSet,ANY-method	GatingSet-methods
GatingSet,flowSet-method	GatingSet-methods
GatingSet,GatingHierarchy,character-method	gh_apply_to_cs
GatingSet-class	GatingSet-class
GatingSet-methods	GatingSet-methods
GatingSetList	GatingSetList-class
GatingSetList-class	GatingSetList-class
getChildren	gs_pop_get_children
getChildren,GatingSet,character-method	gs_pop_get_children
getCompensationMatrices	gh_get_compensations
getCompensationMatrices,GatingHierachy-method	gh_get_compensations
getData	gh_pop_get_data
getData,GatingHierarchy-method	gh_pop_get_data
getData,GatingSet-method	gh_pop_get_data
getData,GatingSetList-method	gh_pop_get_data
getDescendants	gh_pop_get_descendants
getDescendants,GatingHierarchy-method	gh_pop_get_descendants
getGate	gs_pop_get_gate
getGate,GatingHierarchy,character-method	gs_pop_get_gate
getGate,GatingSet,character-method	gs_pop_get_gate
getGate,GatingSetList,character-method	gs_pop_get_gate
getIndices	gh_pop_get_indices
getIndices,GatingHierarchy,character-method	gh_pop_get_indices
getNodes	gs_get_pop_paths
getNodes,GatingSet-method	gs_get_pop_paths
getParent	gs_pop_get_children
getParent,GatingSet,character-method	gs_pop_get_children
getPopStats	gh_pop_compare_stats
getPopStats,GatingHierarchy-method	gh_pop_compare_stats
getPopStats,GatingSet-method	gs_pop_get_count_fast
getProp	gh_pop_get_proportion
getSingleCellExpression	gs_get_singlecell_expression
getSingleCellExpressionByGate	gs_get_singlecell_expression
getStats	gs_pop_get_stats
getStats,GatingHierarchy-method	gs_pop_get_stats
getStats,GatingSet-method	gs_pop_get_stats
getStats,GatingSetList-method	gs_pop_get_stats
getTotal	gh_pop_get_proportion
getTransformations	gh_get_transformations
getTransformations,GatingHierarchy-method	gh_get_transformations
get_cytoframe_from_cs	cytoset
get_default_backend	default_backend
get_leaf_nodes	gs_get_leaf_nodes
get_log_level	loglevel
gh_apply_to_cs	gh_apply_to_cs
gh_apply_to_new_fcs	gh_apply_to_new_fcs
gh_cleanup	cleanup
gh_cleanup_temp	cleanup_temp
gh_copy_gate	gh_copy_gate
gh_get_cluster_labels	gh_get_cluster_labels
gh_get_compensations	gh_get_compensations
gh_get_leaf_nodes	gs_get_leaf_nodes
gh_get_pop_paths	gs_get_pop_paths
gh_get_transformations	gh_get_transformations
gh_keyword_delete	keyword-mutators
gh_keyword_insert	keyword-mutators
gh_keyword_rename	keyword-mutators
gh_keyword_set	keyword-mutators
gh_plot_pop_count_cv	gs_plot_pop_count_cv
gh_pop_compare_stats	gh_pop_compare_stats
gh_pop_get_children	gs_pop_get_children
gh_pop_get_cluster_name	gh_pop_get_cluster_name
gh_pop_get_count	gh_pop_get_proportion
gh_pop_get_data	gh_pop_get_data
gh_pop_get_descendants	gh_pop_get_descendants
gh_pop_get_full_path	gh_pop_get_full_path
gh_pop_get_gate	gs_pop_get_gate
gh_pop_get_indices	gh_pop_get_indices
gh_pop_get_indices_mat	gh_pop_get_indices_mat
gh_pop_get_parent	gs_pop_get_children
gh_pop_get_proportion	gh_pop_get_proportion
gh_pop_get_stats	gs_pop_get_stats
gh_pop_get_stats_tfilter	gs_pop_get_stats_tfilter
gh_pop_is_bool_gate	nodeflags
gh_pop_is_gated	nodeflags
gh_pop_is_hidden	nodeflags
gh_pop_is_negated	nodeflags
gh_pop_move	gh_pop_move
gh_pop_remove	pop_add
gh_pop_set_gate	gs_pop_set_gate
gh_pop_set_indices	gh_pop_set_indices
gh_pop_set_name	gs_pop_set_name
gh_pop_set_visibility	gs_pop_set_visibility
gh_pop_set_xml_count	gh_pop_set_xml_count
groupByChannels	gs_split_by_channels
groupByTree	gs_split_by_tree
gslist_to_gs	gslist_to_gs
gs_check_redundant_nodes	gs_check_redundant_nodes
gs_cleanup	cleanup
gs_cleanup_temp	cleanup_temp
gs_cyto_data	gs_cyto_data
gs_cyto_data,GatingSet-method	gs_cyto_data
gs_cyto_data<-	gs_cyto_data
gs_cyto_data<-,GatingSet-method	gs_cyto_data
gs_get_compensations	gh_get_compensations
gs_get_compensation_internal	gs_get_compensation_internal
gs_get_cytoframe	cytoset
gs_get_leaf_nodes	gs_get_leaf_nodes
gs_get_pop_paths	gs_get_pop_paths
gs_get_singlecell_expression	gs_get_singlecell_expression
gs_get_singlecell_expression_by_gate	gs_get_singlecell_expression
gs_get_uri	cs_get_uri
gs_is_h5	gs_is_persistent
gs_is_persistent	gs_is_persistent
gs_keyword_delete	keyword-mutators
gs_keyword_insert	keyword-mutators
gs_keyword_rename	keyword-mutators
gs_keyword_set	keyword-mutators
gs_plot_diff_tree	gs_plot_diff_tree
gs_plot_pop_count_cv	gs_plot_pop_count_cv
gs_pop_add	gs_pop_add
gs_pop_get_children	gs_pop_get_children
gs_pop_get_count_fast	gs_pop_get_count_fast
gs_pop_get_count_with_meta	gs_pop_get_count_fast
gs_pop_get_data	gh_pop_get_data
gs_pop_get_gate	gs_pop_get_gate
gs_pop_get_gs	gs_pop_get_gs
gs_pop_get_parent	gs_pop_get_children
gs_pop_get_stats	gs_pop_get_stats
gs_pop_get_stats_tfilter	gs_pop_get_stats_tfilter
gs_pop_remove	gs_pop_add
gs_pop_set_gate	gs_pop_set_gate
gs_pop_set_name	gs_pop_set_name
gs_pop_set_visibility	gs_pop_set_visibility
gs_remove_redundant_channels	gs_remove_redundant_channels
gs_remove_redundant_nodes	gs_remove_redundant_nodes
gs_split_by_channels	gs_split_by_channels
gs_split_by_tree	gs_split_by_tree
gs_update_channels	gs_update_channels
identifier	identifier-methods
identifier,cytoset-method	cytoset
identifier,GatingSet-method	identifier-methods
identifier,GatingSetList-method	identifier-methods
identifier-methods	identifier-methods
identifier<-,cytoset,ANY-method	cytoset
identifier<-,GatingSet,ANY-method	identifier-methods
identifier<-,GatingSet,character-method	identifier-methods
identifier<-,GatingSet-method	identifier-methods
identifier<-,GatingSetList,ANY-method	identifier-methods
identifier<-,GatingSetList,character-method	identifier-methods
isGated	nodeflags
isHidden	nodeflags
isNcdf	gs_is_persistent
isNegated	nodeflags
keyword	keyword
keyword,cytoframe,missing-method	cytoframe
keyword,GatingHierarchy,character-method	keyword
keyword,GatingHierarchy,missing-method	keyword
keyword,GatingSet,character-method	keyword
keyword,GatingSet,missing-method	keyword
keyword,GatingSetList,character-method	keyword
keyword,GatingSetList,missing-method	keyword
keyword-mutators	keyword-mutators
lapply	lapply-methods
lapply,cytoset-method	lapply-methods
lapply,GatingSet-method	lapply-methods
lapply-methods	lapply-methods
length	length
length,GatingSet-method	length
load_cytoframe	load_cytoframe
load_cytoframe_from_fcs	load_cytoframe_from_fcs
load_cytoset	save_cytoset
load_cytoset_from_fcs	load_cytoset_from_fcs
load_gs	save_gs
load_gslist	save_gs
load_meta	load_meta
lock	lock
logicleGml2_trans	logicleGml2_trans
logicle_trans	logicle_trans
logtGml2_trans	logtGml2_trans
markernames	markernames
markernames,cytoframe-method	cytoframe
markernames,cytoset-method	markernames
markernames,GatingHierarchy-method	markernames
markernames,GatingSet-method	markernames
markernames<-,cytoframe-method	cytoframe
markernames<-,cytoset-method	markernames
markernames<-,GatingHierarchy-method	markernames
markernames<-,GatingSet,ANY-method	markernames
markernames<-,GatingSet-method	markernames
markernmaes<-,cytoframe-method	markernames
merge-GatingSet	standardize-GatingSet
merge_list_to_gs	merge_list_to_gs
moveNode	gh_pop_move
ncFlowSet	ncFlowSet-methods
ncFlowSet,GatingSet-method	ncFlowSet-methods
ncFlowSet<-	ncFlowSet-methods
ncFlowSet<-,GatingSet-method	ncFlowSet-methods
nodeflags	nodeflags
openWorkspace	openWorkspace
pData	pData-methods
pData,cytoset-method	cytoset
pData,GatingHierarchy-method	pData-methods
pData,GatingSet-method	pData-methods
pData-methods	pData-methods
pData<-	pData-methods
pData<-,cytoset,data.frame-method	cytoset
pData<-,GatingSet,data.frame-method	pData-methods
pData<-,GatingSetList,data.frame-method	pData-methods
phenoData,cytoset-method	cytoset
phenoData<-,cytoset,ANY-method	cytoset
plot	plot-methods
plot,GatingSet,character-method	plot-methods
plot,GatingSet,missing-method	plot-methods
plot-methods	plot-methods
pop.MFI	stats.fun
pop_add	pop_add
pop_add.factor	pop_add
pop_add.filter	pop_add
pop_add.filters	pop_add
pop_add.logical	pop_add
pop_add.logicalFilterResult	pop_add
pop_add.multipleFilterResult	pop_add
pop_add.quadGate	pop_add
prettyAxis	prettyAxis
rbind2,GatingSetList,missing-method	gslist_to_gs
realize_view	cytoframe
realize_view,cytoframe-method	cytoframe
realize_view,cytoset-method	cytoset
recompute	recompute
recompute.GatingSet	recompute
recompute.GatingSetList	recompute
Rm	gs_pop_add
rotate_gate	rotate_gate
rotate_gate,GatingHierarchy-method	rotate_gate
rotate_gate,GatingSet-method	rotate_gate
rotate_gate.GatingHierarchy	rotate_gate
sampleNames	sampleNames
sampleNames,character-method	save_gs
sampleNames,cytoset,	sampleNames
sampleNames,cytoset-method	sampleNames
sampleNames,GatingSet-method	sampleNames
sampleNames<-	sampleNames
sampleNames<-,cytoset,ANY-method	cytoset
sampleNames<-,GatingSet,ANY-method	sampleNames
sampleNames<-,GatingSet-method	sampleNames
save_cytoset	save_cytoset
save_gs	save_gs
save_gslist	save_gs
scale_gate	scale_gate
scale_gate,GatingHierarchy-method	scale_gate
scale_gate,GatingSet-method	scale_gate
scale_gate.GatingHierarchy	scale_gate
setGate	gs_pop_set_gate
setGate,GatingHierarchy,character,filter-method	gs_pop_set_gate
setGate,GatingSet,character,ANY-method	gs_pop_set_gate
setNode	gs_pop_set_name
setNode,GatingHierarchy,character,ANY-method	gs_pop_set_name
setNode,GatingHierarchy,character,character-method	gs_pop_set_name
setNode,GatingHierarchy,character,logical-method	gs_pop_set_visibility
setNode,GatingSet,character,ANY-method	gs_pop_set_name
set_default_backend	default_backend
set_log_level	loglevel
shift_gate	shift_gate
shift_gate,GatingHierarchy-method	shift_gate
shift_gate,GatingSet-method	shift_gate
shift_gate.GatingHierarchy	shift_gate
show,booleanFilter-method	booleanFilter-class
show,cytoset-method	cytoset
show,GatingHierarchy-method	GatingHierarchy-class
show,GatingSet-method	length
standardize-GatingSet	standardize-GatingSet
stats.fun	stats.fun
subset	subset
subset.GatingSet	subset
swap_data_cols	swap_data_cols
transform	transform
transform,cytoset-method	cytoset
transform,GatingSet-method	transform
transform,GatingSetList-method	transform
transformerList	transformerList
transform_gate	transform_gate
transform_gate,GatingHierarchy-method	transform_gate
transform_gate,GatingSet-method	transform_gate
transform_gate.GatingHierarchy	transform_gate
updateChannels	gs_update_channels
updateIndices	gh_pop_set_indices
updateIndices,GatingHierarchy,character,logical-method	gh_pop_set_indices
[	brackets
[,cytoframe,ANY-method	cytoframe
[,cytoset,ANY-method	cytoset
[,GatingSet,ANY,ANY,ANY-method	brackets
[,GatingSet,ANY-method	brackets
[,GatingSetList,ANY-method	brackets
[[	brackets
[[,cytoset,ANY-method	cytoset
[[,GatingSet,character-method	brackets
[[,GatingSet,logical-method	brackets
[[,GatingSet,numeric-method	brackets
[[<-,cytoset,ANY,ANY,flowFrame-method	cytoset
[[<-,GatingSet,ANY,ANY,GatingHierarchy-method	brackets
