flowWorkspace-package	flowWorkspace-package
add	gs_pop_add
add.default	gs_pop_add
asinhtGml2_trans	asinhtGml2_trans
asinh_Gml2	asinh_Gml2
booleanFilter	booleanFilter-class
booleanFilter-class	booleanFilter-class
char2booleanFilter	booleanFilter-class
checkRedundantNodes	gs_check_redundant_nodes
clone	gs_clone
clone,GatingSet-method	gs_clone
clone-methods	gs_clone
colnames,GatingHierarchy-method	markernames
colnames,GatingSet-method	markernames
colnames<-,GatingHierarchy-method	markernames
colnames<-,GatingSet-method	markernames
compensate,GatingSet,ANY-method	compensate
compensate,GatingSetList,ANY-method	compensate
compute_timestep	compute_timestep
copyNode	gh_copy_gate
dropRedundantChannels	gs_remove_redundant_channels
dropRedundantNodes	gs_remove_redundant_nodes
estimateLogicle.GatingHierarchy	estimateLogicle.GatingHierarchy
extract_cluster_pop_name_from_node	extract_cluster_pop_name_from_node
filterObject	filterObject
filterObject.default	filterObject
filter_to_list	filterObject
filter_to_list.booleanFilter	filterObject
filter_to_list.ellipsoidGate	filterObject
filter_to_list.logical	filterObject
filter_to_list.polygonGate	filterObject
filter_to_list.rectangleGate	filterObject
fix_channel_slash	fix_channel_slash
flowData	gs_cyto_data
flowData,GatingSet-method	gs_cyto_data
flowData<-	gs_cyto_data
flowJo.fasinh	flowjo_fasinh
flowJo.flog	flowJo_flog
flowJo.fsinh	flowjo_fasinh
flowJoTrans	flowjo_biexp
flowjo_biexp	flowjo_biexp
flowJo_biexp_trans	flowjo_biexp_trans
flowjo_biexp_trans	flowjo_biexp_trans
flowjo_fasinh	flowjo_fasinh
flowJo_fasinh_trans	flowjo_fasinh_trans
flowjo_fasinh_trans	flowjo_fasinh_trans
flowjo_fsinh	flowjo_fasinh
flowjo_log_trans	flowJo_flog
flowWorkspace	flowWorkspace-package
flowWorkspace-deprecated	flowWorkspace-deprecated
flowWorkspace.par.get	flowWorkspace.par.get
flowWorkspace.par.init	flowWorkspace.par.init
flowWorkspace.par.set	flowWorkspace.par.get
flow_breaks	flow_breaks
flow_trans	flow_trans
GatingHierarchy-class	GatingHierarchy-class
GatingSet	GatingSet-class
GatingSet,flowSet,ANY-method	GatingSet-methods
GatingSet,GatingHierarchy,character-method	gh_apply_to_new_fcs
GatingSet-class	GatingSet-class
GatingSetList	GatingSetList-class
GatingSetList-class	GatingSetList-class
getChildren,GatingSet,character-method	gs_pop_get_children
getCompensationMatrices	gh_get_compensations
getCompensationMatrices.GatingHierarchy	gh_get_compensations
getData,GatingHierarchy-method	gs_pop_get_data
getData,GatingSet-method	gs_pop_get_data
getData,GatingSetList-method	gs_pop_get_data
getDescendants	gh_pop_get_descendants
getGate,GatingHierarchy,character-method	gh_pop_get_gate
getGate,GatingSet,character-method	gh_pop_get_gate
getGate,GatingSetList,character-method	gh_pop_get_gate
getIndices,GatingHierarchy,character-method	gh_pop_get_indices
getNodes,GatingSet-method	gs_get_pop_paths
getParent,GatingSet,character-method	gs_pop_get_children
getPopStats,GatingHierarchy-method	gh_pop_compare_stats
getPopStats,GatingSet-method	gs_pop_get_count_fast
getProp	gh_pop_get_proportion
getSingleCellExpression	gs_get_singlecell_expression
getSingleCellExpressionByGate	gs_get_singlecell_expression
getStats	gs_pop_get_stats
getStats.GatingHierarchy	gs_pop_get_stats
getStats.GatingSet	gs_pop_get_stats
getStats.GatingSetList	gs_pop_get_stats
getTotal	gh_pop_get_proportion
getTransformations	gh_get_transformations
getTransformations.GatingHierarchy	gh_get_transformations
get_leaf_nodes	gs_get_leaf_nodes
get_log_level	loglevel
gh_apply_to_new_fcs	gh_apply_to_new_fcs
gh_copy_gate	gh_copy_gate
gh_get_cluster_labels	gh_get_cluster_labels
gh_get_compensations	gh_get_compensations
gh_get_leaf_nodes	gs_get_leaf_nodes
gh_get_pop_paths	gs_get_pop_paths
gh_get_transformations	gh_get_transformations
gh_plot_pop_count_cv	gh_pop_compare_stats
gh_pop_compare_stats	gh_pop_compare_stats
gh_pop_get_children	gs_pop_get_children
gh_pop_get_cluster_name	gh_pop_get_cluster_name
gh_pop_get_count	gh_pop_get_proportion
gh_pop_get_data	gs_pop_get_data
gh_pop_get_descendants	gh_pop_get_descendants
gh_pop_get_full_path	gh_pop_get_full_path
gh_pop_get_gate	gh_pop_get_gate
gh_pop_get_indices	gh_pop_get_indices
gh_pop_get_indices_mat	gh_pop_get_indices_mat
gh_pop_get_parent	gs_pop_get_children
gh_pop_get_proportion	gh_pop_get_proportion
gh_pop_get_stats	gs_pop_get_stats
gh_pop_is_bool_gate	nodeflags
gh_pop_is_gated	nodeflags
gh_pop_is_hidden	nodeflags
gh_pop_is_negated	nodeflags
gh_pop_move	gh_pop_move
gh_pop_remove	pop_add
gh_pop_set_gate	gs_pop_set_gate
gh_pop_set_indices	gh_pop_set_indices
gh_pop_set_name	gs_pop_set_name
gh_pop_set_visibility	gs_pop_set_visibility
gh_pop_set_xml_count	gh_pop_set_xml_count
groupByChannels	gs_split_by_channels
groupByTree	gs_split_by_tree
gslist_to_gs	gslist_to_gs
gs_check_redundant_nodes	gs_check_redundant_nodes
gs_clone	gs_clone
gs_cyto_data	gs_cyto_data
gs_cyto_data,GatingSet-method	gs_cyto_data
gs_cyto_data<-,GatingSet-method	gs_cyto_data
gs_get_compensation_internal	gs_get_compensation_internal
gs_get_leaf_nodes	gs_get_leaf_nodes
gs_get_pop_paths	gs_get_pop_paths
gs_get_singlecell_expression	gs_get_singlecell_expression
gs_get_singlecell_expression_by_gate	gs_get_singlecell_expression
gs_is_h5	gs_is_h5
gs_plot_diff_tree	gs_plot_diff_tree
gs_plot_pop_count_cv	gs_plot_pop_count_cv
gs_pop_add	gs_pop_add
gs_pop_get_children	gs_pop_get_children
gs_pop_get_count_fast	gs_pop_get_count_fast
gs_pop_get_count_with_meta	gs_pop_get_count_fast
gs_pop_get_data	gs_pop_get_data
gs_pop_get_gate	gh_pop_get_gate
gs_pop_get_parent	gs_pop_get_children
gs_pop_get_stats	gs_pop_get_stats
gs_pop_remove	gs_pop_add
gs_pop_set_gate	gs_pop_set_gate
gs_pop_set_name	gs_pop_set_name
gs_pop_set_visibility	gs_pop_set_visibility
gs_remove_redundant_channels	gs_remove_redundant_channels
gs_remove_redundant_nodes	gs_remove_redundant_nodes
gs_split_by_channels	gs_split_by_channels
gs_split_by_tree	gs_split_by_tree
gs_update_channels	gs_update_channels
identifier,GatingSet-method	GatingSet-methods
identifier,GatingSetList-method	GatingSet-methods
identifier<-,GatingSet,character-method	GatingSet-methods
identifier<-,GatingSetList,character-method	GatingSet-methods
isGated	nodeflags
isHidden	nodeflags
isNcdf	gs_is_h5
isNegated	nodeflags
keyword	keyword
keyword,GatingHierarchy,character-method	keyword
keyword,GatingHierarchy,missing-method	keyword
keyword,GatingSet,character-method	keyword
keyword,GatingSet,missing-method	keyword
keyword,GatingSetList,character-method	keyword
keyword,GatingSetList,missing-method	keyword
lapply,GatingSet-method	lapply-methods
length	length
length,GatingSet-method	length
load_gs	save_gs
load_gslist	save_gs
logicleGml2_trans	logicleGml2_trans
logicle_trans	logicle_trans
logtGml2_trans	logtGml2_trans
markernames,GatingHierarchy-method	markernames
markernames,GatingSet-method	markernames
markernames<-,GatingHierarchy-method	markernames
markernames<-,GatingSet-method	markernames
merge-GatingSet	standardize-GatingSet
mkformula	mkformula
moveNode	gh_pop_move
ncFlowSet	ncFlowSet-methods
ncFlowSet,GatingSet-method	ncFlowSet-methods
ncFlowSet<-	ncFlowSet-methods
ncFlowSet<-,GatingSet-method	ncFlowSet-methods
openWorkspace	openWorkspace
pData	pData-methods
pData,GatingHierarchy-method	pData-methods
pData,GatingSet-method	pData-methods
pData<-	pData-methods
pData<-,GatingSet,data.frame-method	pData-methods
pData<-,GatingSetList,data.frame-method	pData-methods
plot	plot-methods
plot,GatingSet,character-method	plot-methods
plot,GatingSet,missing-method	plot-methods
plotGate	plotGate-methods
plotGate,GatingHierarchy,character-method	plotGate-methods
plotGate,GatingHierarchy,missing-method	plotGate-methods
plotGate,GatingHierarchy,numeric-method	plotGate-methods
plotGate,GatingSet,character-method	plotGate-methods
plotGate,GatingSet,missing-method	plotGate-methods
plotGate,GatingSet,numeric-method	plotGate-methods
plotGate,GatingSetList,character-method	plotGate-methods
plotGate-methods	plotGate-methods
pop.MFI	stats.fun
pop_add	pop_add
pop_add.factor	pop_add
pop_add.filter	pop_add
pop_add.filters	pop_add
pop_add.logical	pop_add
pop_add.logicalFilterResult	pop_add
pop_add.multipleFilterResult	pop_add
pop_add.quadGate	pop_add
prettyAxis	prettyAxis
rbind2,GatingSetList,missing-method	gslist_to_gs
recompute	recompute
recompute,GatingSet-method	recompute
recompute,GatingSetList-method	recompute
Rm	gs_pop_add
rotate_gate	rotate_gate
rotate_gate.GatingHierarchy	rotate_gate
rotate_gate.GatingSet	rotate_gate
sampleNames	sampleNames
sampleNames,GatingHierarchy-method	sampleNames
sampleNames,GatingSet-method	sampleNames
sampleNames<-	sampleNames
sampleNames<-,GatingSet,ANY-method	sampleNames
sampleNames<-,GatingSet-method	sampleNames
save_gs	save_gs
save_gslist	save_gs
scale_gate	scale_gate
scale_gate.GatingHierarchy	scale_gate
scale_gate.GatingSet	scale_gate
setGate	gs_pop_set_gate
setGate,GatingHierarchy,character,filter-method	gs_pop_set_gate
setGate,GatingSet,character,ANY-method	gs_pop_set_gate
setNode	gs_pop_set_name
setNode,GatingHierarchy,character,character-method	gs_pop_set_name
setNode,GatingHierarchy,character,logical-method	gs_pop_set_visibility
setNode,GatingSet,character,ANY-method	gs_pop_set_name
set_log_level	loglevel
shift_gate	shift_gate
shift_gate.GatingHierarchy	shift_gate
shift_gate.GatingSet	shift_gate
show,booleanFilter-method	booleanFilter-class
show,GatingHierarchy-method	GatingHierarchy-class
show,GatingSet-method	length
standardize-GatingSet	standardize-GatingSet
subset.GatingSet	subset
swap_data_cols	swap_data_cols
transform,GatingSet-method	transform
transform,GatingSetList-method	transform
transformerList	transformerList
transform_gate	transform_gate
transform_gate.GatingHierarchy	transform_gate
updateChannels	gs_update_channels
updateIndices,GatingHierarchy,character,logical-method	gh_pop_set_indices
[,GatingSet,ANY-method	GatingSet-class
[,GatingSetList,ANY-method	GatingSet-class
[[,GatingSet,character-method	GatingSet-class
[[,GatingSet,logical-method	GatingSet-class
[[,GatingSet,numeric-method	GatingSet-class
[[<-,GatingSet,ANY,ANY,GatingHierarchy-method	GatingSet-class
