Package: flowWorkspace
Type: Package
Title: Infrastructure for representing and interacting with gated and
        ungated cytometry data sets.
Version: 3.34.0
Date: 2011-06-10
Author: Greg Finak, Mike Jiang
Maintainer: Greg Finak <gfinak@fhcrc.org>,Mike Jiang <wjiang2@fhcrc.org>
Description: This package is designed to facilitate comparison of automated
    gating methods against manual gating done in flowJo. This package allows
    you to import basic flowJo workspaces into BioConductor and replicate the
    gating from flowJo using the flowCore functionality. Gating hierarchies,
    groups of samples, compensation, and transformation are performed so that
    the output matches the flowJo analysis.
License: Artistic-2.0
LazyLoad: yes
Imports: Biobase, BiocGenerics, graph, graphics, grDevices, lattice,
        methods, stats, stats4, utils, RBGL, tools, gridExtra,
        Rgraphviz, data.table, dplyr, latticeExtra, Rcpp, RColorBrewer,
        stringr, scales, flowViz, matrixStats, digest, RcppParallel,
        flowCore(>= 1.51.4), ncdfFlow(>= 2.31.1)
Collate: 'AllClasses.R' 'getStats.R' 'GatingHierarchy_Methods.R'
        'GatingSet_Methods.R' 'GatingSetList_Methods.R' 'RcppExports.R'
        'filterObject_Methods.R' 'add_Methods.R' 'copyNode.R'
        'deprecated.R' 'flow_trans.R' 'getDescendants.R'
        'getSingleCellExpression.R' 'identifier.R' 'merge_GatingSet.R'
        'moveNode.R' 'parse_transformer.R' 'setGate_Methods.R'
        'updateIndices.R' 'utils.R' 'zzz.R'
biocViews: ImmunoOncology, FlowCytometry, DataImport, Preprocessing,
        DataRepresentation
Suggests: testthat, flowWorkspaceData, knitr, ggcyto, parallel, CytoML,
        openCyto
LinkingTo: Rcpp, BH(>= 1.62.0-1), RProtoBufLib(>= 1.7.1), cytolib(>=
        1.7.4), RcppParallel
VignetteBuilder: knitr
SystemRequirements: GNU make, C++11
Encoding: UTF-8
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/flowWorkspace
git_branch: RELEASE_3_10
git_last_commit: 31a3c6d
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: yes
Packaged: 2019-10-30 00:13:18 UTC; biocbuild
Built: R 3.6.1; x86_64-conda_cos6-linux-gnu; 2019-11-02 07:45:31 UTC; unix
