flowWorkspace-package	flowWorkspace-package
add	add
add,GatingHierarchy,factor-method	add
add,GatingHierarchy,filter-method	add
add,GatingHierarchy,filters-method	add
add,GatingHierarchy,logical-method	add
add,GatingHierarchy,logicalFilterResult-method	add
add,GatingHierarchy,multipleFilterResult-method	add
add,GatingHierarchy,quadGate-method	add
add,GatingSet,filter-method	add
add,GatingSet,filterList-method	add
add,GatingSet,filters-method	add
add,GatingSet,filtersList-method	add
add,GatingSet,list-method	add
add,GatingSetList,filter-method	add
add,GatingSetList,filterList-method	add
add,GatingSetList,filters-method	add
add,GatingSetList,filtersList-method	add
add,GatingSetList,list-method	add
asinhtGml2_trans	asinhtGml2_trans
asinh_Gml2	asinh_Gml2
booleanFilter	booleanFilter-class
booleanFilter-class	booleanFilter-class
char2booleanFilter	booleanFilter-class
checkRedundantNodes	checkRedundantNodes
clone	clone
clone,GatingSet-method	clone
clone-methods	clone
closeWorkspace	openWorkspace
closeWorkspace,flowJoWorkspace-method	openWorkspace
colnames,GatingHierarchy-method	markernames
colnames,GatingSet-method	markernames
colnames<-,GatingHierarchy-method	markernames
colnames<-,GatingSet-method	markernames
compensate,GatingSet,ANY-method	compensate
compensate,GatingSetList,ANY-method	compensate
dropRedundantChannels	dropRedundantChannels
dropRedundantNodes	dropRedundantNodes
estimateLogicle.GatingHierarchy	estimateLogicle.GatingHierarchy
filterObject	filterObject
filterObject,booleanFilter-method	filterObject
filterObject,ellipsoidGate-method	filterObject
filterObject,logical-method	filterObject
filterObject,polygonGate-method	filterObject
filterObject,rectangleGate-method	filterObject
flowData	flowData
flowData,GatingSet-method	flowData
flowData<-	flowData
flowData<-,GatingSet-method	flowData
flowJo.fasinh	flowJo.fasinh
flowJo.flog	flowJo.flog
flowJo.fsinh	flowJo.fasinh
flowJoTrans	flowJoTrans
flowJoWorkspace-class	flowJoWorkspace-class
flowJo_biexp_trans	flowJo_biexp_trans
flowJo_fasinh_trans	flowJo_fasinh_trans
flowWorkspace	flowWorkspace-package
flowWorkspace.par.get	flowWorkspace.par.get
flowWorkspace.par.init	flowWorkspace.par.init
flowWorkspace.par.set	flowWorkspace.par.get
flow_breaks	flow_breaks
flow_trans	flow_trans
GatingHierarchy-class	GatingHierarchy-class
GatingSet	GatingSet-methods
GatingSet,character,character-method	GatingSet-methods
GatingSet,flowSet,ANY-method	GatingSet-methods
GatingSet,GatingHierarchy,character-method	GatingSet-methods
GatingSet-class	GatingSet-class
GatingSetList	GatingSetList-class
GatingSetList-class	GatingSetList-class
getChildren	getParent
getChildren,GatingSet,character-method	getParent
getCompensationMatrices	getCompensationMatrices
getCompensationMatrices,GatingHierarchy-method	getCompensationMatrices
getData	getData-methods
getData,GatingHierarchy,character-method	getData-methods
getData,GatingHierarchy,missing-method	getData-methods
getData,GatingSet,character-method	getData-methods
getData,GatingSet,missing-method	getData-methods
getData,GatingSetList,ANY-method	getData-methods
getDescendants	getDescendants
getFJWSubsetIndices	getFJWSubsetIndices
getGate	getGate
getGate,GatingHierarchy,character-method	getGate
getGate,GatingSet,character-method	getGate
getGate,GatingSetList,character-method	getGate
getIndiceMat	getIndiceMat
getIndices	getIndices
getIndices,GatingHierarchy,character-method	getIndices
getIndices,GatingSet,name-method	getIndices-GatingSet-name-method
getKeywords	getKeywords
getKeywords,flowJoWorkspace,character-method	getKeywords
getKeywords,flowJoWorkspace,numeric-method	getKeywords
getLoglevel	loglevel
getMergedStats	getMergedStats
getNodes	getNodes
getNodes,GatingSet-method	getNodes
getParent	getParent
getParent,GatingSet,character-method	getParent
getPopStats	getPopStats
getPopStats,GatingHierarchy-method	getPopStats
getPopStats,GatingSet-method	getPopStats
getPopStats,GatingSetList-method	getPopStats
getProp	getPopStats
getProp,GatingHierarchy,character-method	getPopStats
getSampleGroups	getSampleGroups
getSampleGroups,flowJoWorkspace-method	getSampleGroups
getSamples	getSamples
getSamples,flowJoWorkspace-method	getSamples
getSingleCellExpression	getSingleCellExpression
getSingleCellExpression,GatingSet,character-method	getSingleCellExpression
getSingleCellExpression,GatingSetList,character-method	getSingleCellExpression
getSingleCellExpressionByGate	getSingleCellExpression
getStats	getStats
getStats.GatingHierarchy	getStats
getStats.GatingSet	getStats
getStats.GatingSetList	getStats
getTotal	getPopStats
getTotal,GatingHierarchy,character-method	getPopStats
getTransformations	getTransformations
getTransformations,GatingHierarchy-method	getTransformations
groupByChannels	groupByChannels
groupByTree	groupByTree
insertGate	insertGate
isNcdf	isNcdf
keyword	keyword
keyword,GatingHierarchy,character-method	keyword
keyword,GatingHierarchy,missing-method	keyword
keyword,GatingSet,character-method	keyword
keyword,GatingSet,missing-method	keyword
keyword,GatingSetList,character-method	keyword
keyword,GatingSetList,missing-method	keyword
lapply,GatingSet-method	lapply-methods
length	length
length,GatingSet-method	length
load_gs	save_gs
load_gslist	save_gs
logicleGml2_trans	logicleGml2_trans
logicle_trans	logicle_trans
logtGml2_trans	logtGml2_trans
markernames,GatingHierarchy-method	markernames
markernames,GatingSet-method	markernames
markernames<-,GatingHierarchy-method	markernames
markernames<-,GatingSet-method	markernames
merge-GatingSet	standardize-GatingSet
mkformula	mkformula
moveNode	moveNode
ncFlowSet	ncFlowSet-methods
ncFlowSet,GatingSet-method	ncFlowSet-methods
ncFlowSet<-	ncFlowSet-methods
ncFlowSet<-,GatingSet-method	ncFlowSet-methods
openWorkspace	openWorkspace
openWorkspace,character-method	openWorkspace
parseWorkspace	parseWorkspace
parseWorkspace,flowJoWorkspace-method	parseWorkspace
pData	pData-methods
pData,GatingHierarchy-method	pData-methods
pData,GatingSet-method	pData-methods
pData<-	pData-methods
pData<-,GatingSet,data.frame-method	pData-methods
pData<-,GatingSetList,data.frame-method	pData-methods
plot	plot-methods
plot,GatingSet,character-method	plot-methods
plot,GatingSet,missing-method	plot-methods
plotGate	plotGate-methods
plotGate,GatingHierarchy,character-method	plotGate-methods
plotGate,GatingHierarchy,missing-method	plotGate-methods
plotGate,GatingHierarchy,numeric-method	plotGate-methods
plotGate,GatingSet,character-method	plotGate-methods
plotGate,GatingSet,missing-method	plotGate-methods
plotGate,GatingSet,numeric-method	plotGate-methods
plotGate,GatingSetList,character-method	plotGate-methods
plotGate-methods	plotGate-methods
plotPopCV	plotPopCV
plotPopCV,GatingHierarchy-method	plotPopCV
plotPopCV,GatingSet-method	plotPopCV
pop.MFI	stats.fun
prettyAxis	prettyAxis
rbind2,GatingSetList,missing-method	GatingSetList-class
recompute	recompute
recompute,GatingSet-method	recompute
recompute,GatingSetList-method	recompute
Rm	add
Rm,character,GatingHierarchy,character-method	add
Rm,character,GatingSet,character-method	add
Rm,character,GatingSetList,character-method	add
sampleNames	sampleNames
sampleNames,GatingHierarchy-method	sampleNames
sampleNames,GatingSet-method	sampleNames
sampleNames<-	sampleNames
sampleNames<-,GatingSet,ANY-method	sampleNames
sampleNames<-,GatingSet-method	sampleNames
save_gs	save_gs
save_gslist	save_gs
set.count.xml	set.count.xml
setGate	setGate
setGate,GatingHierarchy,character,filter-method	setGate
setGate,GatingSet,character,filterList-method	setGate
setGate,GatingSet,character,list-method	setGate
setLoglevel	loglevel
setNode	setNode-methods
setNode,GatingHierarchy,character,character-method	setNode-methods
setNode,GatingHierarchy,character,logical-method	setNode-methods
setNode,GatingSet,character,ANY-method	setNode-methods
show,booleanFilter-method	booleanFilter-class
show,flowJoWorkspace-method	flowJoWorkspace-class
show,GatingHierarchy-method	GatingHierarchy-class
show,GatingSet-method	length
standardize-GatingSet	standardize-GatingSet
subset.GatingSet	subset
transform,GatingSet-method	transform
transform,GatingSetList-method	transform
transformerList	transformerList
updateChannels	updateChannels
updateIndices,GatingHierarchy,character,logical-method	updateIndices-GatingHierarchy-character-logical-method
[,GatingSet,ANY-method	GatingSet-class
[,GatingSetList,ANY-method	GatingSet-class
[[,GatingSet,character-method	GatingSet-class
[[,GatingSet,logical-method	GatingSet-class
[[,GatingSet,numeric-method	GatingSet-class
