Package: flowWorkspace
Type: Package
Title: Infrastructure for representing and interacting with the gated
        cytometry
Version: 3.28.2
Date: 2011-06-10
Author: Greg Finak, Mike Jiang
Maintainer: Greg Finak <gfinak@fhcrc.org>,Mike Jiang <wjiang2@fhcrc.org>
Description: This package is designed to facilitate comparison of automated
    gating methods against manual gating done in flowJo. This package allows
    you to import basic flowJo workspaces into BioConductor and replicate the
    gating from flowJo using the flowCore functionality. Gating hierarchies,
    groups of samples, compensation, and transformation are performed so that
    the output matches the flowJo analysis.
License: Artistic-2.0
LazyLoad: yes
Imports: Biobase, BiocGenerics, graph, graphics, grDevices, lattice,
        methods, stats, stats4, utils, RBGL, XML, tools, gridExtra,
        Rgraphviz, data.table, dplyr, latticeExtra, Rcpp, RColorBrewer,
        stringr, scales, flowViz, matrixStats
Collate: 'AllGenerics.R' 'AllClasses.R' 'GatingHierarchy_Methods.R'
        'GatingSet_Methods.R' 'GatingSetList_Methods.R' 'RcppExports.R'
        'filterObject_Methods.R' 'add_Methods.R'
        'flowJoWorkspace_Methods.R' 'flow_trans.R' 'getDescendants.R'
        'getSingleCellExpression.R' 'getStats.R' 'merge_GatingSet.R'
        'moveNode.R' 'setGate_Methods.R' 'updateIndices.R' 'utils.R'
        'zzz.R'
Depends: R (>= 2.16.0),flowCore(>= 1.45.14),ncdfFlow(>= 2.25.4)
biocViews: FlowCytometry, DataImport, Preprocessing, DataRepresentation
Suggests: testthat, flowWorkspaceData, knitr, ggcyto, parallel
LinkingTo: Rcpp, BH(>= 1.62.0-1), RProtoBufLib, cytolib(>= 1.1.3)
VignetteBuilder: knitr
SystemRequirements: xml2, GNU make, C++11
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/flowWorkspace
git_branch: RELEASE_3_7
git_last_commit: bd5ee4c
git_last_commit_date: 2018-09-12
Date/Publication: 2018-09-13
NeedsCompilation: yes
Packaged: 2018-09-13 23:21:10 UTC; biocbuild
Built: R 3.5.1; x86_64-pc-linux-gnu; 2018-10-15 09:55:33 UTC; unix
