CHANGES IN VERSION 0.99.4
--------------------------

BUG FIXES

    o Minor bug fix when using thresholds

CHANGES IN VERSION 0.99.1
-------------------------

NEW FEATURES

    o This is the submitted version of the package.


CHANGES IN VERSION 2.0.0
------------------------

NEW FEATURES


    o New flowType using an enhanced dynamic programming algorithm implemented in C++, allowing for searching only a subset of the phenotype space (to make very high-dimensional data like CyTOF and single cell RT-PCR feasible), and to allow the setting of multiple levels of expression.


    o Note: this version brings some minor but necessary changes to the way in which the flowType function is called, which may break backwards compatibility for some users. Also note that the return value from flowType is no longer compatible with version 1.x of RchyOptimyx; users wishing to use RchyOptimyx with flowType 2.x should use the new and improved version 2.x of RchyOptimyx, which is actually simpler and much more intuitive.

CHANGES IN VERSION 2.0.1
------------------------
	o Switch to using the BH package for Boost library dependencies, rather than packaging up several MB of source code.
	o Fixed a bug where flowMeans could provide interleaved partitions, resulting in the partitions directly produced by flowMeans disagreeing with those based on the thresholds computed from those partitions (as is used in the C++ code). Now, the Partitions values returned in the result of running flowType is based on the thresholds computed from the initial flowMeans partitions, and agrees with the results stored in CellCounts.

CHANGES IN VERSION 2.3.0
------------------------
o To maintain some backwards compatibility, allow users to specify method='thresholds' as either capital or lower case.

CHANGES IN VERSION 2.7.0
------------------------
o Minor bugfix to make partitions matrix come out correctly when more than one threshold is used. 
