Package: flowSpy
Type: Package
Title: A Toolkit for Flow And Mass Cytometry Data
Version: 1.4.0
Date: 2020-04-20
Authors@R: person("Yuting", "Dai", role = c("aut", "cre"), email = "forlynna@sjtu.edu.cn")
Description: A trajectory inference and visualization toolkit 
    for flow and mass cytometry data. flowSpy offers complete 
    analyzing workflow for flow and mass cytometry data. flowSpy 
    can be a valuable tool for application ranging from clustering 
    and dimensionality reduction to trajectory reconstruction 
    and pseudotime estimation for flow and mass cytometry data.
Depends: R (>= 3.6), igraph
Imports: FlowSOM, Rtsne, ggplot2, destiny, gmodels, flowUtils, Biobase,
        Matrix, flowCore, sva, matrixStats, methods, mclust, prettydoc,
        RANN(>= 2.5), Rcpp (>= 0.12.0), BiocNeighbors, cluster,
        pheatmap, scatterpie, umap, scatterplot3d, limma, stringr,
        grDevices, grid, stats
Suggests: BiocGenerics, knitr, RColorBrewer, rmarkdown, testthat,
        BiocStyle
biocViews: CellBiology, Clustering, Visualization, Software,
        CellBasedAssays, FlowCytometry, NetworkInference, Network
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
BugReports: https://github.com/JhuangLab/flowSpy/issues
URL: http://www.r-project.org, https://github.com/JhuangLab/flowSpy
LinkingTo: Rcpp
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/flowSpy
git_branch: RELEASE_3_12
git_last_commit: e8ba381
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: yes
Packaged: 2020-10-28 00:13:52 UTC; biocbuild
Author: Yuting Dai [aut, cre]
Maintainer: Yuting Dai <forlynna@sjtu.edu.cn>
Built: R 4.0.3; x86_64-conda-linux-gnu; 2020-11-03 23:42:41 UTC; unix
