bulk_long_pipeline	bulk_long_pipeline
bulk_windows_pipeline_setup	bulk_windows_pipeline_setup
callBasilisk	callBasilisk
create_config	create_config
create_sce_from_dir	create_sce_from_dir
create_se_from_dir	create_se_from_dir
generate_umap	generate_umap
generic_long_pipeline	generic_long_pipeline
get_default_config_file	get_default_config_file
gff3_to_bed12	gff3_to_bed12
match_cell_barcode_cpp	match_cell_barcode_cpp
merge_bulk_fastq	merge_bulk_fastq
merge_bulk_fastq_python	merge_bulk_fastq_python
minimap2_align	minimap2_align
minimap2_check_callable	minimap2_check_callable
parse_gff_tree	parse_gff_tree
parse_json_config	parse_json_config
print_config	print_config
samtools_as_bam	samtools_as_bam
samtools_sort_index	samtools_sort_index
sc_annotate_umap	sc_annotate_umap
sc_DTU_analysis	sc_DTU_analysis
sc_long_multisample_pipeline	sc_long_multisample_pipeline
sc_long_pipeline	sc_long_pipeline
sc_mutations	sc_mutations
sc_windows_pipeline_setup	sc_windows_pipeline_setup
windows_pipeline_isoforms	windows_pipeline_isoforms
windows_pipeline_quantification	windows_pipeline_quantification
write_config	write_config
