Package: FLAMES
Type: Package
Title: FLAMES: Full Length Analysis of Mutations and Splicing in long
        read RNA-seq data
Version: 1.3.4
Date: 2022-4-21
Authors@R: c(person("Tian", "Luyi", role=c("aut"),
                    email="tian.l@wehi.edu.au"),
             person("Voogd", "Oliver", role=c("aut", "cre"),
                    email="voogd.o@wehi.edu.au"),
             person("Schuster", "Jakob", role=c("aut"),
		    email="schuster.j@wehi.edu.au"),
	     person("Wang", "Changqing", role=c("aut"),
		    email="wang.ch@wehi.edu.au"),
	     person("Su", "Shian",  role=c("aut"),
                    email="su.s@wehi.edu.au"),
             person("Ritchie","Matthew", role=c("ctb"),
                    email="mritchie@wehi.edu.au"))
Description: Semi-supervised isoform detection and annotation from both bulk and single-cell 
  long read RNA-seq data. Flames provides automated pipelines for analysing isoforms,
  as well as intermediate functions for manual execution.
biocViews: RNASeq, SingleCell, Transcriptomics, DataImport,
        DifferentialSplicing, AlternativeSplicing, GeneExpression
License: GPL (>= 2)
Encoding: UTF-8
Imports: basilisk, reticulate, SingleCellExperiment,
        SummarizedExperiment, Rsamtools, utils, zlibbioc, scater,
        dplyr, tidyr, magrittr, S4Vectors, scuttle, stats, rtracklayer,
        igraph, ggbio, GenomicRanges, Matrix, BiocGenerics, ggplot2,
        scran, ComplexHeatmap, RColorBrewer, circlize, grid, gridExtra,
        cowplot, stringr, bambu, GenomeInfoDb, withr, Biostrings,
        GenomicFeatures
Suggests: BiocStyle, knitr, rmarkdown, markdown, BiocFileCache
LinkingTo: Rcpp, Rhtslib, zlibbioc
SystemRequirements: GNU make, C++11
RoxygenNote: 7.2.1
VignetteBuilder: knitr
URL: https://github.com/OliverVoogd/FLAMES
git_url: https://git.bioconductor.org/packages/FLAMES
git_branch: master
git_last_commit: c5de75d
git_last_commit_date: 2022-08-06
Date/Publication: 2022-08-07
NeedsCompilation: yes
Packaged: 2022-08-07 20:40:19 UTC; biocbuild
Author: Tian Luyi [aut],
  Voogd Oliver [aut, cre],
  Schuster Jakob [aut],
  Wang Changqing [aut],
  Su Shian [aut],
  Ritchie Matthew [ctb]
Maintainer: Voogd Oliver <voogd.o@wehi.edu.au>
Built: R 4.2.2; x86_64-conda-linux-gnu; 2023-05-23 00:13:44 UTC; unix
