# FastqCleaner

A Shiny web-app to clean FASTQ files with R and Bioconductor

## 1. Prerequisites and dependences for the direct installation of this GitHub repository

#### Linux users

- Libraries OpenSSL and libcurl installed

-> Ubuntu:

Paste the following command in terminal:

    sudo apt-get install libssl-dev libcurl4-openssl-dev

#### Mac users

- Command Line Tools

Type in a Terminal:

    xcode-select --install

A software update popup will ask if the Command Line Tools must be installed

- XQuartz

XQuartz can be downloaded from the following link: https://www.xquartz.org/

#### Windows users

- Rtools

The program is available at https://cran.r-project.org/bin/windows/Rtools/

## 2. Installation

Paste the following command in the R console:

    source("https://goo.gl/u2xraS")

## 3. Launching the application

    library("FastqCleaner")
    launch_fqc()

## 4. Description and usage

See the tutorial of the application in this link