# FABIA: Factor Analysis for Bicluster Acquisition

## Documentation for package ‘fabia’ version 2.30.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

A C E F I L M N P R S U X Z

## -- A --

avini | Factorization instances
avini-method | Factorization instances
avini<- | Factorization instances
avini<--method | Factorization instances

## -- C --

center | Factorization instances
center-method | Factorization instances
center<- | Factorization instances
center<--method | Factorization instances

## -- E --

estimateMode | Estimation of the modes of the rows of a matrix
extractBic | Extraction of Biclusters
extractPlot | Plotting of Biclustering Results

## -- F --

fabi | Factor Analysis for Bicluster Acquisition: Laplace Prior (FABI)
fabia | Factor Analysis for Bicluster Acquisition: Laplace Prior (FABIA)
fabiaDemo | Demos for fabia
fabiap | Factor Analysis for Bicluster Acquisition: Post-Projection (FABIAP)
fabias | Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIAS)
fabiasp | Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIASP)
fabiaVersion | Display version info for package and for FABIA
Factorization | Factorization instances
Factorization-class | Factorization instances
Factorization-method | Factorization instances

## -- I --

ini | Factorization instances
ini-method | Factorization instances
ini<- | Factorization instances
ini<--method | Factorization instances

## -- L --

L | Factorization instances
l | Factorization instances
L-method | Factorization instances
l-method | Factorization instances
L<- | Factorization instances
l<- | Factorization instances
L<--method | Factorization instances
l<--method | Factorization instances
lapla | Factorization instances
lapla-method | Factorization instances
lapla<- | Factorization instances
lapla<--method | Factorization instances
LZ | Factorization instances
LZ-method | Factorization instances
LZ<- | Factorization instances
LZ<--method | Factorization instances

## -- M --

M | Factorization instances
M-method | Factorization instances
M<- | Factorization instances
M<--method | Factorization instances
makeFabiaData | Generation of Bicluster Data
makeFabiaDataBlocks | Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataBlocksPos | Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataPos | Generation of Bicluster Data
matrixImagePlot | Plotting of a Matrix
mfsc | Sparse Matrix Factorization for Bicluster Analysis (MFSC)

## -- N --

n | Factorization instances
n-method | Factorization instances
n<- | Factorization instances
n<--method | Factorization instances
nmfdiv | Non-negative Matrix Factorization: Kullback-Leibler Divergence
nmfeu | Non-negative Matrix Factorization: Euclidean Distance
nmfsc | Non-negative Sparse Matrix Factorization

## -- P --

p1 | Factorization instances
p1-method | Factorization instances
p1<- | Factorization instances
p1<--method | Factorization instances
p2 | Factorization instances
p2-method | Factorization instances
p2<- | Factorization instances
p2<--method | Factorization instances
parameters | Factorization instances
parameters-method | Factorization instances
parameters<- | Factorization instances
parameters<--method | Factorization instances
plot-method | Factorization instances
plotBicluster | Plotting of a bicluster
projFunc | Projection of a Vector to a Sparse Vector
projFuncPos | Projection of a Vector to a Non-negative Sparse Vector
Psi | Factorization instances
Psi-method | Factorization instances
Psi<- | Factorization instances
Psi<--method | Factorization instances

## -- R --

readSamplesSpfabia | Factor Analysis for Bicluster Acquisition: Read Sparse Matrix Samples
readSpfabiaResult | Factor Analysis for Bicluster Acquisition: Read Results of SpFabia

## -- S --

samplesPerFeature | Factor Analysis for Bicluster Acquisition: Supplies samples per feature
scaleData | Factorization instances
scaleData-method | Factorization instances
scaleData<- | Factorization instances
scaleData<--method | Factorization instances
show-method | Factorization instances
showSelected | Factorization instances
showSelected-method | Factorization instances
spfabia | Factor Analysis for Bicluster Acquisition: SPARSE FABIA
summary-method | Factorization instances

## -- U --

U | Factorization instances
U-method | Factorization instances
U<- | Factorization instances
U<--method | Factorization instances

## -- X --

X | Factorization instances
X-method | Factorization instances
X<- | Factorization instances
X<--method | Factorization instances
xavini | Factorization instances
xavini-method | Factorization instances
xavini<- | Factorization instances
xavini<--method | Factorization instances

## -- Z --

Z | Factorization instances
Z-method | Factorization instances
Z<- | Factorization instances
Z<--method | Factorization instances