{% set version = "1.6.0" %}
{% set name = "extraChIPs" %}
{% set bioc = "3.18" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 462672c12f16f912b7e3d4b30a07162f
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  run_exports: '{{ pin_subpackage("bioconductor-extrachips", max_pin="x.x") }}'
# Suggests: BiocStyle, covr, cqn, harmonicmeanp, here, knitr, magrittr, plyranges, quantro, rmarkdown, testthat (>= 3.0.0), tidyverse
requirements:
  host:
    - 'bioconductor-biocio >=1.12.0,<1.13.0'
    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
    - 'bioconductor-csaw >=1.36.0,<1.37.0'
    - 'bioconductor-edger >=4.0.0,<4.1.0'
    - 'bioconductor-enrichedheatmap >=1.32.0,<1.33.0'
    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
    - 'bioconductor-gviz >=1.46.0,<1.47.0'
    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
    - 'bioconductor-iranges >=2.36.0,<2.37.0'
    - 'bioconductor-limma >=3.58.0,<3.59.0'
    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
    - r-base
    - r-broom
    - r-complexupset
    - 'r-dplyr >=1.1.1'
    - r-forcats
    - r-ggforce
    - 'r-ggplot2 >=3.4.0'
    - r-ggrepel
    - 'r-ggside >=0.2.2'
    - r-glue
    - r-matrixstats
    - r-patchwork
    - r-rcolorbrewer
    - r-rlang
    - r-scales
    - r-stringr
    - r-tibble
    - r-tidyr
    - r-tidyselect
    - r-vctrs
    - r-venndiagram
    - libblas
    - liblapack
  run:
    - 'bioconductor-biocio >=1.12.0,<1.13.0'
    - 'bioconductor-biocparallel >=1.36.0,<1.37.0'
    - 'bioconductor-csaw >=1.36.0,<1.37.0'
    - 'bioconductor-edger >=4.0.0,<4.1.0'
    - 'bioconductor-enrichedheatmap >=1.32.0,<1.33.0'
    - 'bioconductor-genomeinfodb >=1.38.0,<1.39.0'
    - 'bioconductor-genomicinteractions >=1.36.0,<1.37.0'
    - 'bioconductor-genomicranges >=1.54.0,<1.55.0'
    - 'bioconductor-gviz >=1.46.0,<1.47.0'
    - 'bioconductor-interactionset >=1.30.0,<1.31.0'
    - 'bioconductor-iranges >=2.36.0,<2.37.0'
    - 'bioconductor-limma >=3.58.0,<3.59.0'
    - 'bioconductor-rsamtools >=2.18.0,<2.19.0'
    - 'bioconductor-rtracklayer >=1.62.0,<1.63.0'
    - 'bioconductor-s4vectors >=0.40.0,<0.41.0'
    - 'bioconductor-summarizedexperiment >=1.32.0,<1.33.0'
    - r-base
    - r-broom
    - r-complexupset
    - 'r-dplyr >=1.1.1'
    - r-forcats
    - r-ggforce
    - 'r-ggplot2 >=3.4.0'
    - r-ggrepel
    - 'r-ggside >=0.2.2'
    - r-glue
    - r-matrixstats
    - r-patchwork
    - r-rcolorbrewer
    - r-rlang
    - r-scales
    - r-stringr
    - r-tibble
    - r-tidyr
    - r-tidyselect
    - r-vctrs
    - r-venndiagram
  build:
    - {{ compiler('c') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'Additional functions for working with ChIP-Seq data'
  description: 'This package builds on existing tools and adds some simple but extremely useful capabilities for working wth ChIP-Seq data. The focus is on detecting differential binding windows/regions. One set of functions focusses on set-operations retaining mcols for GRanges objects, whilst another group of functions are to aid visualisation of results. Coercion to tibble objects is also included.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

