extraChIPs-package	extraChIPs-package
.ec_HMP	dot-ec_HMP
.ec_HMP_adj	dot-ec_HMP_adj
.makeFinalProfileHeatmap	dot-makeFinalProfileHeatmap
.mapFeatures	dot-mapFeatures
.mapGi	dot-mapGi
.mapWithin	dot-mapWithin
as_tibble	as_tibble
as_tibble.DataFrame	as_tibble
as_tibble.GenomicRanges	as_tibble
as_tibble.GInteractions	as_tibble
as_tibble.Seqinfo	as_tibble
as_tibble.SummarizedExperiment	as_tibble
as_tibble.TopTags	as_tibble
bestOverlap	bestOverlap-methods
bestOverlap,GRanges,GRanges-method	bestOverlap-methods
bestOverlap,GRanges,GRangesList-method	bestOverlap-methods
chopMC	chopMC
collapseGenes	collapseGenes
colToRanges	colToRanges-methods
colToRanges,data.frame-method	colToRanges-methods
colToRanges,DataFrame-method	colToRanges-methods
colToRanges,GRanges-method	colToRanges-methods
cytobands	cytobands
defineRegions	defineRegions
distinctMC	distinctMC
dualFilter	dualFilter
ex_datasets	ex_datasets
ex_genes	ex_datasets
ex_hic	ex_datasets
ex_prom	ex_datasets
ex_trans	ex_datasets
fitAssayDiff	fitAssayDiff-methods
fitAssayDiff,SummarizedExperiment-method	fitAssayDiff-methods
fixed_width_datasets	fixed_width_datasets
getProfileData	getProfileData-methods
getProfileData,BigWigFile,GenomicRanges-method	getProfileData-methods
getProfileData,BigWigFileList,GenomicRanges-method	getProfileData-methods
getProfileData,character,GenomicRanges-method	getProfileData-methods
grch37.cytobands	cytobands
grch38.cytobands	cytobands
grlToSE	grlToSE-methods
grlToSE,GRangesList-method	grlToSE-methods
importPeaks	importPeaks
intersectMC	setoptsMC-methods
intersectMC,GRanges,GRanges-method	setoptsMC-methods
makeConsensus	makeConsensus
mapByFeature	mapByFeature
mergeByCol	mergeByCol-methods
mergeByCol,GenomicRanges-method	mergeByCol-methods
mergeByCol,RangedSummarizedExperiment-method	mergeByCol-methods
mergeByHMP	mergeByHMP-methods
mergeByHMP,GenomicRanges-method	mergeByHMP-methods
mergeByHMP,RangedSummarizedExperiment-method	mergeByHMP-methods
mergeBySig	mergeBySig-methods
mergeBySig,GenomicRanges-method	mergeBySig-methods
mergeBySig,RangedSummarizedExperiment-method	mergeBySig-methods
partitionRanges	partitionRanges-methods
partitionRanges,GRanges,GRanges-method	partitionRanges-methods
peaks	fixed_width_datasets
plotAssayDensities	plotAssayDensities-methods
plotAssayDensities,SummarizedExperiment-method	plotAssayDensities-methods
plotAssayHeatmap	plotAssayHeatmap-methods
plotAssayHeatmap,SummarizedExperiment-method	plotAssayHeatmap-methods
plotAssayPCA	plotAssayPCA-methods
plotAssayPCA,SummarizedExperiment-method	plotAssayPCA-methods
plotAssayRle	plotAssayRle-methods
plotAssayRle,SummarizedExperiment-method	plotAssayRle-methods
plotHFGC	plotHFGC
plotOverlaps	plotOverlaps-methods
plotOverlaps,GRangesList-method	plotOverlaps-methods
plotOverlaps,list-method	plotOverlaps-methods
plotPie	plotPie-methods
plotPie,data.frame-method	plotPie-methods
plotPie,DataFrame-method	plotPie-methods
plotPie,GRanges-method	plotPie-methods
plotProfileHeatmap	plotProfileHeatmap-methods
plotProfileHeatmap,GenomicRanges-method	plotProfileHeatmap-methods
plotProfileHeatmap,GenomicRangesList-method	plotProfileHeatmap-methods
plotSplitDonut	plotSplitDonut-methods
plotSplitDonut,data.frame-method	plotSplitDonut-methods
plotSplitDonut,DataFrame-method	plotSplitDonut-methods
plotSplitDonut,GRanges-method	plotSplitDonut-methods
propOverlap	propOverlap-methods
propOverlap,GRanges,GRanges-method	propOverlap-methods
reduceMC	reduceMC
se	fixed_width_datasets
setdiffMC	setoptsMC-methods
setdiffMC,GRanges,GRanges-method	setoptsMC-methods
setoptsMC	setoptsMC-methods
stitchRanges	stitchRanges
unionMC	setoptsMC-methods
unionMC,GRanges,GRanges-method	setoptsMC-methods
voomWeightsFromCPM	voomWeightsFromCPM
