{% set version = "1.10.0" %}
{% set name = "extraChIPs" %}
{% set bioc = "3.20" %}

about:
  description: This package builds on existing tools and adds some simple but extremely useful capabilities for working wth ChIP-Seq data. The focus is on detecting differential binding windows/regions. One set of functions focusses on set-operations retaining mcols for GRanges objects, whilst another group of functions are to aid visualisation of results. Coercion to tibble objects is also implemented.
  home: https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html
  license: GPL-3
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
  summary: Additional functions for working with ChIP-Seq data

build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  run_exports: '{{ pin_subpackage("bioconductor-extrachips", max_pin="x.x") }}'

package:
  name: bioconductor-{{ name|lower }}
  version: '{{ version }}'

# Suggests: apeglm, BiocStyle, covr, DESeq2, EnrichedHeatmap, Gviz, harmonicmeanp, here, knitr, limma, magrittr, plyranges, quantro, rmarkdown, testthat (>= 3.0.0), tidyverse
requirements:

  build:
    - {{ compiler('c') }}
    - make

  host:
    - bioconductor-biocio >=1.16.0,<1.17.0
    - bioconductor-biocparallel >=1.40.0,<1.41.0
    - bioconductor-csaw >=1.40.0,<1.41.0
    - bioconductor-edger >=4.4.0,<4.5.0
    - bioconductor-genomeinfodb >=1.42.0,<1.43.0
    - bioconductor-genomicalignments >=1.42.0,<1.43.0
    - bioconductor-genomicinteractions >=1.40.0,<1.41.0
    - bioconductor-genomicranges >=1.58.0,<1.59.0
    - bioconductor-interactionset >=1.34.0,<1.35.0
    - bioconductor-iranges >=2.40.0,<2.41.0
    - bioconductor-rsamtools >=2.22.0,<2.23.0
    - bioconductor-rtracklayer >=1.66.0,<1.67.0
    - bioconductor-s4vectors >=0.44.0,<0.45.0
    - bioconductor-summarizedexperiment >=1.36.0,<1.37.0
    - r-base
    - r-broom
    - r-complexupset
    - r-dplyr >=1.1.1
    - r-forcats
    - r-ggforce
    - r-ggplot2 >=3.5.0
    - r-ggrepel
    - r-ggside >=0.3.1
    - r-glue
    - r-matrixstats
    - r-patchwork
    - r-rcolorbrewer
    - r-rlang
    - r-scales
    - r-stringr
    - r-tibble
    - r-tidyr
    - r-tidyselect
    - r-vctrs
    - r-venndiagram
    - libblas
    - liblapack

  run:
    - bioconductor-biocio >=1.16.0,<1.17.0
    - bioconductor-biocparallel >=1.40.0,<1.41.0
    - bioconductor-csaw >=1.40.0,<1.41.0
    - bioconductor-edger >=4.4.0,<4.5.0
    - bioconductor-genomeinfodb >=1.42.0,<1.43.0
    - bioconductor-genomicalignments >=1.42.0,<1.43.0
    - bioconductor-genomicinteractions >=1.40.0,<1.41.0
    - bioconductor-genomicranges >=1.58.0,<1.59.0
    - bioconductor-interactionset >=1.34.0,<1.35.0
    - bioconductor-iranges >=2.40.0,<2.41.0
    - bioconductor-rsamtools >=2.22.0,<2.23.0
    - bioconductor-rtracklayer >=1.66.0,<1.67.0
    - bioconductor-s4vectors >=0.44.0,<0.45.0
    - bioconductor-summarizedexperiment >=1.36.0,<1.37.0
    - r-base
    - r-broom
    - r-complexupset
    - r-dplyr >=1.1.1
    - r-forcats
    - r-ggforce
    - r-ggplot2 >=3.5.0
    - r-ggrepel
    - r-ggside >=0.3.1
    - r-glue
    - r-matrixstats
    - r-patchwork
    - r-rcolorbrewer
    - r-rlang
    - r-scales
    - r-stringr
    - r-tibble
    - r-tidyr
    - r-tidyselect
    - r-vctrs
    - r-venndiagram

source:
  md5: 922d1c66195a54c8d0918f64196a3ab3
  url:
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz
    - https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz

test:
  commands:
    - $R -e "library('{{ name }}')"

