%in2%	InternalFunctions
AllEvents_RNASeq	AllEvents_RNASeq
AllEvents_RNASeq_MP	AllEvents_RNASeq_MP
all_simple_paths2	InternalFunctions
annotate2	InternalFunctions
annotateEvents	InternalFunctions
annotateEventsMultipath	InternalFunctions
AnnotateEvents_KLL	InternalFunctions
AnnotateEvents_RNASeq	InternalFunctions
AnnotateEvents_RNASeq_MultiPath	InternalFunctions
annotateFeatures2	InternalFunctions
ArrayDatamultipath	ArrayDatamultipath
ArraysData	ArraysData
calculateCorrelationTest	InternalFunctions
callGRseq_parallel	InternalFunctions
callPrimer3	InternalFunctions
callPrimer3probes	InternalFunctions
call_get_table_Bootstrap	InternalFunctions
CDFfromGTF	CDFfromGTF
CDFfromGTF_Multipath	CDFfromGTF_Multipath
checkContrastDesignMatrices	InternalFunctions
ClassifyEvents	InternalFunctions
convertToSGFeatures2	InternalFunctions
CreateExSmatrix	CreateExSmatrix
CreateSequenceforProbe	InternalFunctions
dgl	InternalFunctions
estimateAbsoluteConc	InternalFunctions
estimateAbsoluteConcmultipath	InternalFunctions
EventDetection	EventDetection
EventDetectionMultipath	EventDetectionMultipath
EventDetection_transcriptome	EventDetection_transcriptome
EventPointer	EventPointer
EventPointer_Bootstraps	EventPointer_Bootstraps
EventPointer_IGV	EventPointer_IGV
EventPointer_RNASeq	EventPointer_RNASeq
EventPointer_RNASeq_IGV	EventPointer_RNASeq_IGV
EventPointer_RNASeq_TranRef	EventPointer_RNASeq_TranRef
EventPointer_RNASeq_TranRef_IGV	EventPointer_RNASeq_TranRef_IGV
Events_ReClassification	Events_ReClassification
EventXtrans	EventXtrans
filterimagine	InternalFunctions
findPotencialExons	InternalFunctions
FindPrimers	FindPrimers
findTriplets	InternalFunctions
findTriplets2	InternalFunctions
Fit	Fit
fitgl	InternalFunctions
flat2Cdf	InternalFunctions
fullExons	InternalFunctions
genreverse	InternalFunctions
getbootstrapdata	getbootstrapdata
GetCounts	InternalFunctions
GetCountsMP	InternalFunctions
getDistanceseachPath	InternalFunctions
getDominants2	InternalFunctions
getDominantsFor	InternalFunctions
getDominantsRev	InternalFunctions
getEventMultiPaths	InternalFunctions
getEventPaths	InternalFunctions
getExonsFullSignal	InternalFunctions
getFinalExons	InternalFunctions
getgeneraldata	InternalFunctions
GetIGVPaths	InternalFunctions
getInfo	InternalFunctions
getPathCounts	InternalFunctions
getPathCountsMP	InternalFunctions
getPathFPKMs	InternalFunctions
getpij	InternalFunctions
getPSI	InternalFunctions
GetPSI_FromTranRef	GetPSI_FromTranRef
getPSI_RNASeq	InternalFunctions
getPSI_RNASeq_MultiPath	InternalFunctions
getRandomFlow	InternalFunctions
getrankexons	InternalFunctions
getranksequence	InternalFunctions
get_beta	InternalFunctions
get_table	InternalFunctions
get_table_Bootstrap	InternalFunctions
get_YB	InternalFunctions
GseaApproach	InternalFunctions
hyperGeometricApproach	InternalFunctions
hyperMatrixRes	InternalFunctions
IHsummarization	InternalFunctions
includeaexons	InternalFunctions
InternalFunctions	InternalFunctions
MatrixRes	InternalFunctions
mclapplyPSI_Bootstrap	InternalFunctions
mergeExonsTerminal2	InternalFunctions
myphyper	InternalFunctions
MyPrimers	MyPrimers
MyPrimers_taqman	MyPrimers_taqman
pdist2	InternalFunctions
pgl	InternalFunctions
poissonBinomialApproach	InternalFunctions
PrepareBam_EP	PrepareBam_EP
PrepareCountData	InternalFunctions
PrepareOutput	InternalFunctions
PrepareProbes	InternalFunctions
PrimerSequenceCommonFor	InternalFunctions
PrimerSequenceCommonRev	InternalFunctions
PrimerSequenceGeneral	InternalFunctions
PrimerSequenceTwo	InternalFunctions
ProbesSequence	InternalFunctions
processFeatures2	InternalFunctions
Protein_Domain_Enrichment	Protein_Domain_Enrichment
PSIss	PSIss
PSI_Statistic	PSI_Statistic
pvalue_incr_PSI	InternalFunctions
qdgl	InternalFunctions
qgl	InternalFunctions
reclasify_intern	InternalFunctions
ResulTable	ResulTable
rgl	InternalFunctions
sacartranscritos	InternalFunctions
SF_Prediction	SF_Prediction
SG_creation	InternalFunctions
SG_creation_fast	InternalFunctions
SG_creation_RNASeq	InternalFunctions
SG_Info	InternalFunctions
SG_reclassify	SG_reclassify
SG_RNASeq	SG_RNASeq
significanceFunction	InternalFunctions
sort.exons	InternalFunctions
speedglm.wfit2	InternalFunctions
transfromedge	InternalFunctions
TxD	TxD
uniquefast	InternalFunctions
Wilcoxon.z.matrix	InternalFunctions
WilcoxonApproach	InternalFunctions
WriteGTF	InternalFunctions
WriteGTF_RNASeq	InternalFunctions
