{% set version = "3.0.0" %}
{% set name = "EventPointer" %}
{% set bioc = "3.13" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: a7c141ef59c8ca9406a54cb5c35059b6
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, dplyr, kableExtra
requirements:
  host:
    - 'bioconductor-affxparser >=1.64.0,<1.65.0'
    - 'bioconductor-biostrings >=2.60.0,<2.61.0'
    - 'bioconductor-bsgenome >=1.60.0,<1.61.0'
    - 'bioconductor-genomeinfodb >=1.28.0,<1.29.0'
    - 'bioconductor-genomicfeatures >=1.44.0,<1.45.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-graph >=1.70.0,<1.71.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-limma >=3.48.0,<3.49.0'
    - 'bioconductor-qvalue >=2.24.0,<2.25.0'
    - 'bioconductor-rbgl >=1.68.0,<1.69.0'
    - 'bioconductor-rhdf5 >=2.36.0,<2.37.0'
    - 'bioconductor-s4vectors >=0.30.0,<0.31.0'
    - 'bioconductor-sgseq >=1.26.0,<1.27.0'
    - 'bioconductor-summarizedexperiment >=1.22.0,<1.23.0'
    - 'bioconductor-tximport >=1.20.0,<1.21.0'
    - r-abind
    - r-base
    - r-cobs
    - r-doparallel
    - r-foreach
    - r-glmnet
    - r-igraph
    - r-iterators
    - r-lpsolve
    - r-mass
    - r-matrix
    - r-matrixstats
    - r-nnls
    - r-poibin
    - r-prodlim
    - r-speedglm
    - r-stringr
    - libblas
    - liblapack
  run:
    - 'bioconductor-affxparser >=1.64.0,<1.65.0'
    - 'bioconductor-biostrings >=2.60.0,<2.61.0'
    - 'bioconductor-bsgenome >=1.60.0,<1.61.0'
    - 'bioconductor-genomeinfodb >=1.28.0,<1.29.0'
    - 'bioconductor-genomicfeatures >=1.44.0,<1.45.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-graph >=1.70.0,<1.71.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-limma >=3.48.0,<3.49.0'
    - 'bioconductor-qvalue >=2.24.0,<2.25.0'
    - 'bioconductor-rbgl >=1.68.0,<1.69.0'
    - 'bioconductor-rhdf5 >=2.36.0,<2.37.0'
    - 'bioconductor-s4vectors >=0.30.0,<0.31.0'
    - 'bioconductor-sgseq >=1.26.0,<1.27.0'
    - 'bioconductor-summarizedexperiment >=1.22.0,<1.23.0'
    - 'bioconductor-tximport >=1.20.0,<1.21.0'
    - r-abind
    - r-base
    - r-cobs
    - r-doparallel
    - r-foreach
    - r-glmnet
    - r-igraph
    - r-iterators
    - r-lpsolve
    - r-mass
    - r-matrix
    - r-matrixstats
    - r-nnls
    - r-poibin
    - r-prodlim
    - r-speedglm
    - r-stringr
  build:
    - {{ compiler('c') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'An effective identification of alternative splicing events using junction arrays and RNA-Seq data'
  description: 'EventPointer is an R package to identify alternative splicing events that involve either simple (case-control experiment) or complex experimental designs such as time course experiments and studies including paired-samples. The algorithm can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing data (RNA-Seq). The software returns a data.frame with the detected alternative splicing events: gene name, type of event (cassette, alternative 3'',...,etc), genomic position, statistical significance and increment of the percent spliced in (Delta PSI) for all the events. The algorithm can generate a series of files to visualize the detected alternative splicing events in IGV. This eases the interpretation of results and the design of primers for standard PCR validation.'

