addOffsets	addOffsets
callPeaks	callPeaks
cleanCounts	cleanCounts
controlEM	controlEM
epigraHMM	epigraHMM
epigraHMMDataSetFromBam	epigraHMMDataSetFromBam
epigraHMMDataSetFromMatrix	epigraHMMDataSetFromMatrix
initializer	initializer
normalizeCounts	normalizeCounts
plotCounts	plotCounts
plotPatterns	plotPatterns
