# Generated by roxygen2: do not edit by hand

export(generateAmpliconReport)
export(generateBedEcdf)
export(generateBedReport)
export(generateCaptureReport)
export(generateCytosineReport)
export(generateVcfReport)
export(preprocessBam)
importFrom(BiocGenerics,sort)
importFrom(BiocGenerics,width)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,seqnames)
importFrom(SummarizedExperiment,rowRanges)
importFrom(VariantAnnotation,ScanVcfParam)
importFrom(VariantAnnotation,expand)
importFrom(VariantAnnotation,readVcf)
importFrom(data.table,as.data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,merge.data.table)
importFrom(data.table,setDT)
importFrom(data.table,setattr)
importFrom(data.table,setkey)
importFrom(data.table,setorder)
importFrom(methods,is)
importFrom(stats,ecdf)
importFrom(stats,setNames)
importFrom(stringi,stri_length)
importFrom(utils,globalVariables)
useDynLib(epialleleR, .registration=TRUE)
