edge-package	edge
apply_jackstraw	apply_jackstraw
apply_jackstraw,deSet-method	apply_jackstraw
apply_qvalue	apply_qvalue
apply_qvalue,deSet-method	apply_qvalue
apply_snm	apply_snm
apply_snm,deSet-method	apply_snm
apply_sva	apply_sva
apply_sva,deSet-method	apply_sva
betaCoef	betaCoef
betaCoef,deFit-method	betaCoef
build_models	build_models
build_study	build_study
deFit-class	deFit-class
deSet	deSet
deSet,ExpressionSet-method	deSet
deSet-class	deSet-class
edge	edge
endotoxin	endotoxin
fitFull	fitFull
fitFull,deFit-method	fitFull
fitNull	fitNull
fitNull,deFit-method	fitNull
fit_models	fit_models
fit_models,deSet-method	fit_models
fullMatrix	fullMatrix
fullMatrix,deSet-method	fullMatrix
fullMatrix<-	fullMatrix
fullMatrix<-,deSet-method	fullMatrix
fullModel	fullModel
fullModel,deSet-method	fullModel
fullModel<-	fullModel
fullModel<-,deSet-method	fullModel
gibson	gibson
individual	individual
individual,deSet-method	individual
individual<-	individual
individual<-,deSet-method	individual
kidney	kidney
kl_clust	kl_clust
kl_clust,deSet,deFit-method	kl_clust
kl_clust,deSet,missing-method	kl_clust
lrt	lrt
lrt,deSet,deFit-method	lrt
lrt,deSet,missing-method	lrt
nullMatrix	nullMatrix
nullMatrix,deSet-method	nullMatrix
nullMatrix<-	nullMatrix
nullMatrix<-,deSet-method	nullMatrix
nullModel	nullModel
nullModel,deSet-method	nullModel
nullModel<-	nullModel
nullModel<-,deSet-method	nullModel
odp	odp
odp,deSet,deFit-method	odp
odp,deSet,missing-method	odp
qvalueObj	qvalueObj
qvalueObj,deSet-method	qvalueObj
qvalueObj<-	qvalueObj
qvalueObj<-,deSet-method	qvalueObj
resFull	resFull
resFull,deFit-method	resFull
resNull	resNull
resNull,deFit-method	resNull
show	show
show,deFit-method	show
show,deSet-method	show
sType	sType
sType,deFit-method	sType
summary	summary
summary,deFit-method	summary
summary,deSet-method	summary
