# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Aug  2 12:10:44 2019
# ------------------------------------------------

package:
    name: bioconductor-edge
    version: 2.16.0
source:
    md5: 48cb021c6bd3677e96f44d419ef4382f
    url:
        - https://bioarchive.galaxyproject.org/edge_2.16.0.tar.gz
        - https://bioconductor.org/packages/3.9/bioc/src/contrib/edge_2.16.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-edge/bioconductor-edge_2.16.0_src_all.tar.gz
build:
    number: '1'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r36h516909a_1
requirements:
    build:
        - _libgcc_mutex 0.1 main
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_7
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_7
        - libgcc-ng 9.1.0 hdf63c60_0
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - make 4.2.1 h14c3975_2004
    host:
        - _libgcc_mutex 0.1 main
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_7
        - bioconductor-annotate 1.62.0 r36_1
        - bioconductor-annotationdbi 1.46.0 r36_1
        - bioconductor-biobase 2.44.0 r36h516909a_1
        - bioconductor-biocgenerics 0.30.0 r36_1
        - bioconductor-biocparallel 1.18.0 r36he1b5a44_1
        - bioconductor-genefilter 1.66.0 r36hc99cbb1_1
        - bioconductor-iranges 2.18.1 r36h516909a_0
        - bioconductor-lfa 1.14.0 r36h516909a_1
        - bioconductor-limma 3.40.2 r36h516909a_0
        - bioconductor-qvalue 2.16.0 r36_1
        - bioconductor-s4vectors 0.22.0 r36h516909a_1
        - bioconductor-snm 1.32.0 r36_1
        - bioconductor-sva 3.32.1 r36h516909a_0
        - bwidget 1.9.11 0
        - bzip2 1.0.8 h516909a_0
        - ca-certificates 2019.6.16 hecc5488_0
        - cairo 1.16.0 hfb77d84_1002
        - curl 7.65.3 hf8cf82a_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_0
        - fribidi 1.0.5 h516909a_1002
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_7
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_1
        - gfortran_linux-64 7.3.0 h553295d_7
        - glib 2.58.3 h6f030ca_1002
        - gmp 6.1.2 hf484d3e_1000
        - graphite2 1.3.13 hf484d3e_1000
        - gsl 2.5 h294904e_0
        - gxx_impl_linux-64 7.3.0 hdf63c60_1
        - gxx_linux-64 7.3.0 h553295d_7
        - harfbuzz 2.4.0 h9f30f68_2
        - icu 64.2 he1b5a44_0
        - jpeg 9c h14c3975_1001
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 11_openblas
        - libcblas 3.8.0 11_openblas
        - libcurl 7.65.3 hda55be3_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_0
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 11_openblas
        - libopenblas 0.3.6 h6e990d7_6
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.0.10 h57b8799_1003
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.9 hee79883_2
        - lz4-c 1.8.3 he1b5a44_1001
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pango 1.42.4 he7ab937_0
        - pcre 8.41 hf484d3e_1003
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-abind 1.4_5 r36h6115d3f_1002
        - r-ade4 1.7_13 r36hcdcec82_1001
        - r-ape 5.3 r36h0357c0b_1
        - r-assertthat 0.2.1 r36h6115d3f_1
        - r-backports 1.1.4 r36hcdcec82_1
        - r-base 3.6.1 h6e652e1_3
        - r-bh 1.69.0_1 r36h6115d3f_1
        - r-bit 1.1_14 r36hcdcec82_1
        - r-bit64 0.9_7 r36hcdcec82_1001
        - r-bitops 1.0_6 r36hcdcec82_1003
        - r-blob 1.2.0 r36_1
        - r-boot 1.3_23 r36h6115d3f_2
        - r-cli 1.1.0 r36h6115d3f_1
        - r-cluster 2.1.0 r36h9bbef5b_1
        - r-clusterr 1.2.0 r36h0357c0b_1
        - r-colorspace 1.4_1 r36hcdcec82_1
        - r-corpcor 1.6.9 r36h6115d3f_1002
        - r-crayon 1.3.4 r36h6115d3f_1002
        - r-dbi 1.0.0 r36h6115d3f_1002
        - r-digest 0.6.20 r36h0357c0b_1
        - r-ellipsis 0.2.0.1 r36hcdcec82_1
        - r-fansi 0.4.0 r36hcdcec82_1001
        - r-fd 1.0_12 r36h9bbef5b_1001
        - r-formatr 1.7 r36h6115d3f_1
        - r-futile.logger 1.4.3 r36h6115d3f_1002
        - r-futile.options 1.0.1 r36h6115d3f_1001
        - r-geometry 0.4.2 r36h0357c0b_0
        - r-ggplot2 3.2.0 r36h6115d3f_1
        - r-glue 1.3.1 r36hcdcec82_1
        - r-gmp 0.5_13.5 r36h0357c0b_1
        - r-gtable 0.3.0 r36h6115d3f_2
        - r-gtools 3.8.1 r36hcdcec82_1003
        - r-irlba 2.3.3 r36h516909a_1
        - r-jackstraw 1.3 r36h6115d3f_1
        - r-labeling 0.3 r36h6115d3f_1002
        - r-lambda.r 1.2.3 r36h6115d3f_1001
        - r-lattice 0.20_38 r36hcdcec82_1002
        - r-lazyeval 0.2.2 r36hcdcec82_1
        - r-linprog 0.9_2 r36h6115d3f_1
        - r-lme4 1.1_21 r36h0357c0b_1
        - r-lpsolve 5.6.13.1 r36hcdcec82_1
        - r-magic 1.5_9 r36h6115d3f_1
        - r-magrittr 1.5 r36h6115d3f_1002
        - r-mass 7.3_51.4 r36hcdcec82_1
        - r-matrix 1.2_17 r36hcdcec82_1
        - r-matrixstats 0.54.0 r36hcdcec82_1001
        - r-memoise 1.1.0 r36h6115d3f_1002
        - r-mgcv 1.8_28 r36hcdcec82_1
        - r-minqa 1.2.4 r36h6786f55_1003
        - r-munsell 0.5.0 r36h6115d3f_1002
        - r-nlme 3.1_140 r36h9bbef5b_1
        - r-nloptr 1.2.1 r36h0357c0b_1
        - r-permute 0.9_5 r36_1
        - r-pillar 1.4.2 r36h6115d3f_2
        - r-pkgconfig 2.0.2 r36h6115d3f_1002
        - r-plogr 0.2.0 r36h6115d3f_1002
        - r-plyr 1.8.4 r36h0357c0b_1003
        - r-prettyunits 1.0.2 r36h6115d3f_1002
        - r-r6 2.4.0 r36h6115d3f_2
        - r-rcolorbrewer 1.1_2 r36h6115d3f_1002
        - r-rcpp 1.0.2 r36h0357c0b_0
        - r-rcpparmadillo 0.9.500.2.0 r36h0357c0b_1
        - r-rcppeigen 0.3.3.5.0 r36h0357c0b_1
        - r-rcppprogress 0.4.1 r36h6115d3f_1
        - r-rcurl 1.95_4.12 r36hcdcec82_1
        - r-reshape2 1.4.3 r36h0357c0b_1004
        - r-rlang 0.4.0 r36hcdcec82_1
        - r-rsqlite 2.1.2 r36h0357c0b_0
        - r-rsvd 1.0.2 r36h6115d3f_0
        - r-scales 1.0.0 r36h0357c0b_1002
        - r-snow 0.4_3 r36h6115d3f_1001
        - r-stringi 1.4.3 r36h0e574ca_3
        - r-stringr 1.4.0 r36h6115d3f_1
        - r-survival 2.44_1.1 r36hcdcec82_1
        - r-tibble 2.1.3 r36hcdcec82_1
        - r-utf8 1.1.4 r36hcdcec82_1001
        - r-vctrs 0.2.0 r36hcdcec82_1
        - r-vegan 2.5_5 r36h9bbef5b_1
        - r-viridislite 0.3.0 r36h6115d3f_1002
        - r-withr 2.1.2 r36h6115d3f_1001
        - r-xml 3.98_1.20 r36hcdcec82_1
        - r-xtable 1.8_4 r36h6115d3f_2
        - r-zeallot 0.1.0 r36h6115d3f_1001
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - tk 8.6.9 hed695b0_1002
        - tktable 2.10 h555a92e_1
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.8 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1005
        - zstd 1.4.0 h3b9ef0a_0
    run:
        - bioconductor-biobase >=2.44.0,<2.45.0
        - bioconductor-qvalue >=2.16.0,<2.17.0
        - bioconductor-snm >=1.32.0,<1.33.0
        - bioconductor-sva >=3.32.0,<3.33.0
        - libgcc-ng >=7.3.0
        - r-base >=3.6,<3.7.0a0
        - r-jackstraw
        - r-mass
test:
    commands:
        - $R -e "library('edge')"
about:
    home: https://bioconductor.org/packages/3.9/bioc/html/edge.html
    license: MIT + file LICENSE
    summary: The edge package implements methods for carrying out differential expression
        analyses of genome-wide gene expression studies. Significance testing using
        the optimal discovery procedure and generalized likelihood ratio tests (equivalent
        to F-tests and t-tests) are implemented for general study designs. Special
        functions are available to facilitate the analysis of common study designs,
        including time course experiments. Other packages such as snm, sva, and qvalue
        are integrated in edge to provide a wide range of tools for gene expression
        analysis.
extra:
    copy_test_source_files: true
    final: true
