Package: easyRNASeq
Version: 2.14.0
Date: 2017-07-13
Type: Package
Title: Count summarization and normalization for RNA-Seq data
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler
Maintainer: Nicolas Delhomme <nicolas.delhomme@umu.se>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.31.3), BiocGenerics (>= 0.17.2), BiocParallel
        (>= 1.5.1), biomaRt (>= 2.27.2), Biostrings (>= 2.39.3), DESeq
        (>= 1.23.0), edgeR (>= 3.13.4), GenomeInfoDb (>= 1.7.3),
        genomeIntervals (>= 1.27.0), GenomicAlignments (>= 1.7.3),
        GenomicRanges (>= 1.23.16), SummarizedExperiment (>= 1.1.11),
        graphics, IRanges (>= 2.5.27), LSD (>= 3.0), locfit, methods,
        parallel, Rsamtools (>= 1.23.1), S4Vectors (>= 0.9.38),
        ShortRead (>= 1.29.1), utils
Suggests: BiocStyle (>= 1.9.2), BSgenome (>= 1.39.0),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl,
        GenomicFeatures (>= 1.23.15), knitr, rmarkdown, RnaSeqTutorial
        (>= 0.9.0), RUnit (>= 0.4.31)
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-10-30 23:24:49 UTC; biocbuild
Built: R 3.4.1; ; 2018-02-16 11:18:23 UTC; unix
