Package: DiffBind
Type: Package
Version: 3.0.3
Title: Differential Binding Analysis of ChIP-Seq Peak Data
Authors@R: c(person("Rory","Stark", email="rory.stark@cruk.cam.ac.uk",
                  role = c("aut", "cre")),
             person("Gord","Brown",email="gdbzork@gmail.com",
                  role="aut"))
Description: Compute differentially bound sites from multiple ChIP-seq
        experiments using affinity (quantitative) data. Also enables
        occupancy (overlap) analysis and plotting functions.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 4.0), GenomicRanges, SummarizedExperiment
Imports: RColorBrewer, amap, gplots, grDevices, limma,
        GenomicAlignments, locfit, stats, utils, IRanges, lattice,
        systemPipeR, tools, Rcpp, dplyr, ggplot2, BiocParallel,
        parallel, S4Vectors, Rsamtools (>= 2.0), DESeq2, methods,
        graphics, ggrepel, apeglm, ashr, GreyListChIP
Suggests: BiocStyle, testthat, xtable
Enhances: rgl, XLConnect, edgeR, csaw, BSgenome, GenomeInfoDb
LinkingTo: Rhtslib (>= 1.15.3), Rcpp
SystemRequirements: GNU make
Collate: core.R parallel.R model.R counts.R contrast.R normalize.R
        analyze.R analyze_deseq2.R analyze_edgeR.R blacklist.R report.R
        plots.R io.R helper.R utils.R RcppExports.R cpp_wrapper.R DBA.R
biocViews: Sequencing, ChIPSeq, DifferentialPeakCalling, ATACSeq,
        Epigenetics, FunctionalGenomics
URL:
        https://www.cruk.cam.ac.uk/core-facilities/bioinformatics-core/software/diffbind
git_url: https://git.bioconductor.org/packages/DiffBind
git_branch: RELEASE_3_12
git_last_commit: 2c5ea61
git_last_commit_date: 2020-11-08
Date/Publication: 2020-11-08
NeedsCompilation: yes
Packaged: 2020-11-09 00:04:40 UTC; biocbuild
Author: Rory Stark [aut, cre],
  Gord Brown [aut]
Maintainer: Rory Stark <rory.stark@cruk.cam.ac.uk>
Built: R 4.0.3; x86_64-conda-linux-gnu; 2020-11-11 00:01:41 UTC; unix
