Package: DiffBind
Type: Package
Version: 2.2.12
Title: Differential Binding Analysis of ChIP-Seq peak data
Author: Rory Stark<rory.stark@cruk.cam.ac.uk>, Gord Brown
        <gdbzork@gmail.com>
Maintainer: Rory Stark<rory.stark@cruk.cam.ac.uk>
Description: Compute differentially bound sites from multiple ChIP-seq
        experiments using affinity (quantitative) data. Also enables
        occupancy (overlap) analysis and plotting functions.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 3.3.0), GenomicRanges, SummarizedExperiment
Imports: RColorBrewer, amap, edgeR, gplots, grDevices, limma,
        GenomicAlignments, locfit, stats, utils, IRanges, zlibbioc,
        lattice, systemPipeR, tools, Rcpp, dplyr, BiocParallel,
        parallel, S4Vectors, Rsamtools, DESeq2, methods
Suggests: DESeq, BiocStyle, testthat
Enhances: rgl, XLConnect
LinkingTo: Rsamtools (>= 1.19.38), Rcpp
Collate: core.R parallel.R counts.R contrast.R analyze.R io.R helper.R
        utils.R RcppExports.R cpp_wrapper.R DBA.R
biocViews: Sequencing, ChIPSeq, DifferentialPeakCalling
NeedsCompilation: yes
Packaged: 2017-04-07 23:00:04 UTC; biocbuild
Built: R 3.3.2; x86_64-pc-linux-gnu; 2017-08-27 01:50:44 UTC; unix
