Package: DIAlignR
Type: Package
Title: Dynamic Programming Based Alignment of MS2 Chromatograms
Version: 1.2.0
Author: Shubham Gupta <shubham.1637@gmail.com>, Hannes Rost <hannes.rost@utoronto.ca>
Maintainer: Shubham Gupta <shubham.1637@gmail.com>
Description: To obtain unbiased proteome coverage from a biological sample, mass-spectrometer is operated in 
    Data Independent Acquisition (DIA) mode. Alignment of these DIA runs establishes consistency 
    and less missing values in complete data-matrix. This package implements dynamic programming with
    affine gap penalty based approach for pair-wise alignment of analytes. A hybrid approach of global
    alignment (through MS2 features) and local alignment (with MS2 chromatograms) is implemented in this tool.
License: GPL-3
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.0
biocViews: MassSpectrometry, Metabolomics, Proteomics, Alignment,
        Software
Depends: methods, stats
Imports: zoo (>= 1.8-3), dplyr, tidyr, rlang, mzR (>= 2.18), signal,
        ggplot2, scales, gridExtra, RSQLite, DBI, Rcpp
Suggests: knitr, lattice, latticeExtra, rmarkdown, BiocStyle, testthat
        (>= 2.1.0)
VignetteBuilder: knitr
BugReports: https://github.com/shubham1637/DIAlignR/issues
LinkingTo: Rcpp
SystemRequirements: C++11
git_url: https://git.bioconductor.org/packages/DIAlignR
git_branch: RELEASE_3_12
git_last_commit: 25b9e1a
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: yes
Packaged: 2020-10-27 23:43:41 UTC; biocbuild
Built: R 4.0.3; x86_64-conda-linux-gnu; 2021-03-28 18:25:07 UTC; unix
