{% set version = "1.32.0" %}
{% set name = "DESeq2" %}
{% set bioc = "3.13" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: cf6f5468280b2282d587bec61fc9cb5c
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: testthat, knitr, rmarkdown, vsn, pheatmap, RColorBrewer, apeglm, ashr, tximport, tximeta, tximportData, readr, pbapply, airway, pasilla (>= 0.2.10), glmGamPoi, BiocManager
requirements:
  host:
    - 'bioconductor-biobase >=2.52.0,<2.53.0'
    - 'bioconductor-biocgenerics >=0.38.0,<0.39.0'
    - 'bioconductor-biocparallel >=1.26.0,<1.27.0'
    - 'bioconductor-genefilter >=1.74.0,<1.75.0'
    - 'bioconductor-geneplotter >=1.70.0,<1.71.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-s4vectors >=0.30.0,<0.31.0'
    - 'bioconductor-summarizedexperiment >=1.22.0,<1.23.0'
    - r-base
    - r-ggplot2
    - r-locfit
    - 'r-rcpp >=0.11.0'
    - r-rcpparmadillo
    - libblas
    - liblapack
  run:
    - 'bioconductor-biobase >=2.52.0,<2.53.0'
    - 'bioconductor-biocgenerics >=0.38.0,<0.39.0'
    - 'bioconductor-biocparallel >=1.26.0,<1.27.0'
    - 'bioconductor-genefilter >=1.74.0,<1.75.0'
    - 'bioconductor-geneplotter >=1.70.0,<1.71.0'
    - 'bioconductor-genomicranges >=1.44.0,<1.45.0'
    - 'bioconductor-iranges >=2.26.0,<2.27.0'
    - 'bioconductor-s4vectors >=0.30.0,<0.31.0'
    - 'bioconductor-summarizedexperiment >=1.22.0,<1.23.0'
    - r-base
    - r-ggplot2
    - r-locfit
    - 'r-rcpp >=0.11.0'
    - r-rcpparmadillo
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'LGPL (>= 3)'
  summary: 'Differential gene expression analysis based on the negative binomial distribution'
  description: 'Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
extra:
  identifiers:
    - biotools:deseq2
    - doi:10.1186/s13059-014-0550-8
    - usegalaxy-eu:deseq2
  parent_recipe:
    name: bioconductor-deseq2
    path: recipes/bioconductor-deseq2
    version: 1.20.0

