DEGreport News

CHANGES IN DEGreport 1.11.7

    2017-04-08 Lorena Pantano <lorena.pantano@gmail.com>
    
    Fix: Add new contributor

CHANGES IN DEGreport 1.11.6

    2017-04-07 Lorena Pantano <lorena.pantano@gmail.com>
    
    Feature: Add function to plot genes in a wide format

CHANGES IN DEGreport 1.11.4

    02-17-2017 Lorena Pantano <lorena.pantano@gmail.com>
    
    Feature: Re-organize vignette.
    Feature: Ignore warnings when plotting
    Feature: Improve volcano plot

CHANGES IN DEGreport 1.11.3

    01-03-2017 Lorena Pantano <lorena.pantano@gmail.com>
    
    Fix: fix order of clusters figures that are not in the correct
         place in some cases with many groups.


CHANGES IN DEGreport 1.11.2

    12-09-2016 Lorena Pantano <lorena.pantano@gmail.com>
    
    Features: Add degCheckFactors functions to plot sizefactors used to
              normalize count data.

CHANGES IN DEGreport 1.11.1

    10-18-2016 Lorena Pantano <lorena.pantano@gmail.com>
    
    Fixes: print clusterProfiler output.

CHANGES IN DEGreport 1.9.9

    10-14-2016 Lorena Pantano <lorena.pantano@gmail.com>
    
    Fixes: Fix the reduccion of clusters to use correlation
           values directly.

CHANGES IN DEGreport 1.9.9

    10-06-2016 Lorena Pantano <lorena.pantano@gmail.com>
    
    Fixes: GO enrichment function. Input genes was wrong.
    
CHANGES IN DEGreport 1.9.7
    
    07-29-2015 Lorena Pantano <lorena.pantano@gmail.com>

    Features: Add functions to return markdown report from DESeq2 object,
              and clustering function for time course data.
    Fixes: small bugs related to Nan values or small diversity values
           in QC plots.

CHANGES IN DEGreport 1.4.0
    
    07-03-2015 Lorena Pantano <lorena.pantano@gmail.com>

    FIX SOME TEXT IN VIGNETTE, AND CLEAN DEPENDS FLAG

CHANGES IN DEGreport 1.01.01
    
    10-17-2014 Lorena Pantano <lorena.pantano@gmail.com>

    FIX BUG WHEN ONLY ONE GENE IS DEG

CHANGES IN DEGreport 0.99.12
    
    09-04-2014 Lorena Pantano <lorena.pantano@gmail.com>

    CORRECT DOC OF createReport

CHANGES IN DEGreport 0.99.11
    
    09-02-2014 Lorena Pantano <lorena.pantano@gmail.com>

    ADD ncores TO REPORT CREATION

CHANGES IN DEGreport 0.99.10
    
    08-16-2014 Lorena Pantano <lorena.pantano@gmail.com>

    REMOVE BIOMART FROM VIGNETTES DUE TO WINDOWS UNKNOWN BUILD ISSUES

CHANGES IN DEGreport 0.99.9
    
    08-02-2014 Lorena Pantano <lorena.pantano@gmail.com>

    ADDING PARALLELIZATION TO BAYESIAN INFERENCE

CHANGES IN DEGreport 0.99.4
    
    05-19-2014 Lorena Pantano <lorena.pantano@gmail.com>

    CODING STYLE
    * replacing tab by 4 spaces
    * cleaning up function
    * adding unit tests
