Package: DEGreport
Version: 1.12.0
Date: 2017-04-10
Type: Package
Title: Report of DEG analysis
Description: Creation of a HTML report of differential expression
    analyses of count data. It integrates some of the code
    mentioned in DESeq2 and edgeR vignettes, and report a ranked
    list of genes according to the fold changes mean and
    variability for each selected gene.
biocViews: DifferentialExpression, Visualization, RNASeq,
        ReportWriting, GeneExpression
Suggests: biomaRt, RUnit, BiocStyle, BiocGenerics, org.Hs.eg.db,
        DESeq2, AnnotationDbi, BiocParallel
Depends: R (>= 3.2.0), quantreg
Imports: utils, methods, ggplot2, ggrepel, Nozzle.R1, coda, edgeR,
        cluster, logging, dplyr, tidyr, reshape, pheatmap, grid,
        gridExtra, knitr, grDevices, stats
Authors@R: c(person("Lorena", "Pantano", email = "lorena.pantano@gmail.com", 
  role = c("aut", "cre")),
  person("John", "Hutchinson", email = "@jnhutchinson", 
  role = c("ctb")),
  person("Victor", "Barrera", email = "@vbarrera", 
  role = c("ctb")),
  person("Mary", "Piper", email = "@marypiper", 
  role = c("ctb")))
Maintainer: Lorena Pantano <lorena.pantano@gmail.com>
License: MIT + file LICENSE
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-04-24 23:48:24 UTC; biocbuild
Author: Lorena Pantano [aut, cre],
  John Hutchinson [ctb],
  Victor Barrera [ctb],
  Mary Piper [ctb]
Built: R 3.4.1; ; 2017-10-18 23:12:15 UTC; unix
