# Vignettes and other documentation

## Vignettes from package 'DECIPHER'

DECIPHER::ArtOfAlignmentInR |  | The Art of Multiple Sequence Alignment in R | PDF | source | R code
DECIPHER::ClassifySequences |  | Classify Sequences | PDF | source | R code
DECIPHER::ClusteringSequences |  | Upsize your clustering with Clusterize | PDF | source | R code
DECIPHER::DECIPHERing |  | Getting Started DECIPHERing | PDF | source | R code
DECIPHER::DesignMicroarray |  | Design Microarray Probes | PDF | source | R code
DECIPHER::DesignPrimers |  | Design Group-Specific Primers | PDF | source | R code
DECIPHER::DesignProbes |  | Design Group-Specific FISH Probes | PDF | source | R code
DECIPHER::DesignSignatures |  | Design Primers That Yield Group-Specific Signatures | PDF | source | R code
DECIPHER::FindChimeras |  | Finding Chimeric Sequences | PDF | source | R code
DECIPHER::FindingGenes |  | The Magic of Gene Finding | PDF | source | R code
DECIPHER::FindingNonCodingRNAs |  | The Double Life of RNA: Uncovering Non-Coding RNAs | PDF | source | R code
DECIPHER::GrowingTrees |  | Growing phylogenetic trees with TreeLine | PDF | source | R code
DECIPHER::RepeatRepeat |  | Detecting obscure tandem repeats in sequences | PDF | source | R code