COMPASS-package	COMPASS-package
categories	categories
CC	COMPASSContainer-data
CellCounts	CellCounts
checkCOMPASSConvergence	checkCOMPASSConvergence
Combinations	Combinations
COMPASS	COMPASS
COMPASSContainer	COMPASSContainer
COMPASSContainer-data	COMPASSContainer-data
COMPASSContainerFromGatingSet	COMPASSContainerFromGatingSet
COMPASSDescription	COMPASSDescription
COMPASSDescription<-	COMPASSDescription
COMPASSfitToCountsTable	COMPASSfitToCountsTable
COMPASSMCMCDiagnosis	COMPASSMCMCDiagnosis
COMPASSResult-accessors	COMPASSResult-accessors
COMPASSResult-data	COMPASSResult-data
CR	COMPASSResult-data
FunctionalityScore	FunctionalityScore
FunctionalityScore.COMPASSResult	FunctionalityScore
FunctionalityScore.default	FunctionalityScore
Gamma	COMPASSResult-accessors
getCounts	getCounts
GetThresholdedIntensities	GetThresholdedIntensities
markers	markers
MeanGamma	COMPASSResult-accessors
melt_	melt_
melt_.data.frame	melt_
melt_.matrix	melt_
merge.COMPASSContainer	merge.COMPASSContainer
metadata	metadata
metadata.COMPASSContainer	metadata
metadata.COMPASSResult	metadata
metadata<-	metadata
metadata<-.COMPASSContainer	metadata
pheatmap	pheatmap
plot	plot.COMPASSResult
plot.COMPASSResult	plot.COMPASSResult
plot2	plot2
plotCOMPASSResultStack	plotCOMPASSResultStack
PolyfunctionalityScore	PolyfunctionalityScore
PolyfunctionalityScore.COMPASSResult	PolyfunctionalityScore
PolyfunctionalityScore.default	PolyfunctionalityScore
Posterior	Posterior
PosteriorDiff	Posterior
PosteriorLogDiff	Posterior
PosteriorPs	Posterior
PosteriorPu	Posterior
print.COMPASSContainer	print.COMPASSContainer
print.COMPASSResult	print.COMPASSResult
Response	Response
Response.COMPASSResult	Response
scores	scores
select_compass_pops	select_compass_pops
shinyCOMPASS	shinyCOMPASS
shinyCOMPASSDeps	shinyCOMPASSDeps
SimpleCOMPASS	SimpleCOMPASS
subset.COMPASSContainer	subset.COMPASSContainer
summary.COMPASSContainer	summary.COMPASSContainer
summary.COMPASSResult	summary.COMPASSResult
TotalCellCounts	TotalCellCounts
translate_marker_names	translate_marker_names
transpose_list	transpose_list
UniqueCombinations	UniqueCombinations
UniqueCombinations.COMPASSContainer	UniqueCombinations
UniqueCombinations.default	UniqueCombinations
