# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Thu May 18 21:05:45 2023
# ------------------------------------------------

package:
  name: bioconductor-cola
  version: 2.4.0
source:
  md5: 1e3ca280422b736d52ec750c077e08fb
  url:
    - https://bioarchive.galaxyproject.org/cola_2.4.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/Archive/cola/cola_2.4.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/cola_2.4.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-cola/bioconductor-cola_2.4.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42hf17093f_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - gxx_linux-64 12.2.0 hb41e900_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-biocgenerics 0.44.0 r42hdfd78af_0
    - bioconductor-complexheatmap 2.14.0 r42hdfd78af_0
    - bioconductor-impute 1.72.0 r42h9913872_1
    - bioconductor-iranges 2.32.0 r42ha9d7317_1
    - bioconductor-s4vectors 0.36.0 r42ha9d7317_1
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.19.0 hd590300_0
    - ca-certificates 2023.5.7 hbcca054_0
    - cairo 1.16.0 h35add3b_1015
    - curl 8.1.0 h409715c_0
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 12.2.0 h55be85b_19
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - harfbuzz 7.3.0 hdb3a94d_0
    - icu 72.1 hcb278e6_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.20.1 h81ceb04_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcblas 3.9.0 5_h92ddd45_netlib
    - libcurl 8.1.0 h409715c_0
    - libdeflate 1.18 h0b41bf4_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgfortran-ng 12.2.0 h69a702a_19
    - libgfortran5 12.2.0 h337968e_19
    - libglib 2.76.2 hebfc3b9_0
    - libgomp 12.2.0 h65d4601_19
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 2.1.5.1 h0b41bf4_0
    - liblapack 3.9.0 5_h92ddd45_netlib
    - libnghttp2 1.52.0 h61bc06f_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 12.2.0 h46fd767_19
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libtiff 4.5.0 ha587672_6
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.0 h0b41bf4_0
    - libxcb 1.13 h7f98852_1004
    - libxml2 2.10.4 hfdac1af_0
    - libzlib 1.2.13 h166bdaf_4
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.1.0 hd590300_3
    - pango 1.50.14 heaa33ce_1
    - pcre2 10.40 hc3806b6_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-askpass 1.1 r42h06615bd_3
    - r-base 4.2.3 h4a03800_2
    - r-brew 1.0_8 r42hc72bb7e_1
    - r-circlize 0.4.15 r42hc72bb7e_1
    - r-clue 0.3_64 r42h133d619_0
    - r-cluster 2.1.4 r42h8da6f51_0
    - r-codetools 0.2_19 r42hc72bb7e_0
    - r-colorspace 2.1_0 r42h133d619_0
    - r-commonmark 1.9.0 r42h133d619_0
    - r-crayon 1.5.2 r42hc72bb7e_1
    - r-curl 4.3.3 r42hf9611b0_2
    - r-digest 0.6.31 r42h38f115c_0
    - r-doparallel 1.0.17 r42hc72bb7e_1
    - r-eulerr 7.0.0 r42h358215d_0
    - r-evaluate 0.21 r42hc72bb7e_0
    - r-foreach 1.5.2 r42hc72bb7e_1
    - r-gensa 1.1.8 r42h38f115c_0
    - r-getoptlong 1.0.5 r42hc72bb7e_1
    - r-globaloptions 0.1.2 r42ha770c72_1
    - r-highr 0.10 r42hc72bb7e_0
    - r-httr 1.4.6 r42hc72bb7e_0
    - r-irlba 2.3.5.1 r42h5f7b363_0
    - r-iterators 1.0.14 r42hc72bb7e_1
    - r-jsonlite 1.8.4 r42h133d619_0
    - r-knitr 1.42 r42hc72bb7e_1
    - r-lattice 0.21_8 r42h133d619_0
    - r-markdown 1.7 r42hc72bb7e_0
    - r-matrix 1.5_4 r42he1ae0d6_0
    - r-matrixstats 0.63.0 r42h06615bd_0
    - r-mclust 6.0.0 r42hb361e29_0
    - r-microbenchmark 1.4.10 r42h57805ef_0
    - r-mime 0.12 r42h06615bd_1
    - r-openssl 2.0.6 r42habfbb5e_0
    - r-png 0.1_8 r42h10cf519_0
    - r-polyclip 1.10_4 r42h7525677_0
    - r-polylabelr 0.2.0 r42h7525677_2
    - r-r6 2.5.1 r42hc72bb7e_1
    - r-rcolorbrewer 1.1_3 r42h785f33e_1
    - r-rcpp 1.0.10 r42h38f115c_0
    - r-rcpparmadillo 0.12.2.0.0 r42h358215d_0
    - r-rjson 0.2.21 r42h7525677_2
    - r-shape 1.4.6 r42ha770c72_1
    - r-skmeans 0.2_15 r42ha770c72_0
    - r-slam 0.1_50 r42h64d53c3_2
    - r-sys 3.4.1 r42h06615bd_0
    - r-xfun 0.39 r42ha503ecb_0
    - r-xml2 1.3.4 r42h096396e_0
    - r-yaml 2.3.7 r42h133d619_0
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.4 h0b41bf4_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - bioconductor-biocgenerics >=0.44.0,<0.45.0
    - bioconductor-complexheatmap >=2.14.0,<2.15.0
    - bioconductor-impute >=1.72.0,<1.73.0
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - libstdcxx-ng >=12
    - r-base >=4.2,<4.3.0a0
    - r-brew
    - r-circlize >=0.4.7
    - r-clue
    - r-cluster
    - r-crayon
    - r-digest
    - r-doparallel
    - r-eulerr
    - r-foreach
    - r-getoptlong
    - r-globaloptions >=0.1.0
    - r-httr
    - r-irlba
    - r-knitr
    - r-markdown
    - r-matrixstats
    - r-mclust
    - r-microbenchmark
    - r-png
    - r-rcolorbrewer
    - r-rcpp >=0.11.0
    - r-skmeans
    - r-xml2
test:
  commands:
    - $R -e "library('cola')"
about:
  description: 'Subgroup classification is a basic task in genomic data analysis,
    especially for gene expression and DNA methylation data analysis. It can also
    be used to test the agreement to known clinical annotations, or to test whether
    there exist significant batch effects. The cola package provides a general framework
    for subgroup classification by consensus partitioning. It has the following features:
    1. It modularizes the consensus partitioning processes that various methods can
    be easily integrated. 2. It provides rich visualizations for interpreting the
    results. 3. It allows running multiple methods at the same time and provides functionalities
    to straightforward compare results. 4. It provides a new method to extract features
    which are more efficient to separate subgroups. 5. It automatically generates
    detailed reports for the complete analysis. 6. It allows applying consensus partitioning
    in a hierarchical manner.'
  home: https://bioconductor.org/packages/3.16/bioc/html/cola.html
  license: MIT + file LICENSE
  license_file: LICENSE
  summary: A Framework for Consensus Partitioning
extra:
  copy_test_source_files: true
  final: true
