# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Mon May 11 18:44:04 2020
# ------------------------------------------------

package:
    name: bioconductor-cola
    version: 1.4.1
source:
    md5: caac76fa2435252b09e361d9a644690a
    url:
        - https://bioarchive.galaxyproject.org/cola_1.4.1.tar.gz
        - https://bioconductor.org/packages/3.11/bioc/src/contrib/cola_1.4.1.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-cola/bioconductor-cola_1.4.1_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r40h5f743cb_0
requirements:
    build:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - binutils_impl_linux-64 2.34 h53a641e_0
        - binutils_linux-64 2.34 hc952b39_18
        - gcc_impl_linux-64 7.3.0 hd420e75_5
        - gcc_linux-64 7.3.0 h553295d_18
        - gxx_impl_linux-64 7.3.0 hdf63c60_5
        - gxx_linux-64 7.3.0 h553295d_18
        - ld_impl_linux-64 2.34 h53a641e_0
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgomp 9.2.0 h24d8f2e_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - make 4.3 h516909a_0
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.34 h53a641e_0
        - binutils_linux-64 2.34 hc952b39_18
        - bioconductor-biocgenerics 0.34.0 r40_0
        - bioconductor-complexheatmap 2.4.2 r40_0
        - bioconductor-impute 1.62.0 r40h323e27b_0
        - bwidget 1.9.14 0
        - bzip2 1.0.8 h516909a_2
        - ca-certificates 2020.4.5.1 hecc5488_0
        - cairo 1.16.0 hcf35c78_1003
        - certifi 2020.4.5.1 py38h32f6830_0
        - curl 7.69.1 h33f0ec9_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.1 he06d7ca_0
        - fribidi 1.0.9 h516909a_0
        - gcc_impl_linux-64 7.3.0 hd420e75_5
        - gcc_linux-64 7.3.0 h553295d_18
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_5
        - gfortran_linux-64 7.3.0 h553295d_18
        - glib 2.58.3 py38h73cb85d_1004
        - graphite2 1.3.13 he1b5a44_1001
        - gsl 2.6 h294904e_0
        - gxx_impl_linux-64 7.3.0 hdf63c60_5
        - gxx_linux-64 7.3.0 h553295d_18
        - harfbuzz 2.4.0 h9f30f68_3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - krb5 1.17.1 h2fd8d38_0
        - ld_impl_linux-64 2.34 h53a641e_0
        - libblas 3.8.0 8_h6e990d7_netlib
        - libcblas 3.8.0 8_h6e990d7_netlib
        - libcurl 7.69.1 hf7181ac_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1007
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgfortran-ng 7.3.0 hdf63c60_5
        - libgomp 9.2.0 h24d8f2e_2
        - libiconv 1.15 h516909a_1006
        - liblapack 3.8.0 8_h6e990d7_netlib
        - libpng 1.6.37 hed695b0_1
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - libtiff 4.1.0 hc7e4089_6
        - libuuid 2.32.1 h14c3975_1000
        - libwebp-base 1.1.0 h516909a_3
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 hee79883_0
        - lz4-c 1.9.2 he1b5a44_1
        - make 4.3 h516909a_0
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1g h516909a_0
        - pango 1.42.4 h7062337_4
        - pcre 8.44 he1b5a44_0
        - pcre2 10.34 h2f06484_0
        - pip 20.1 pyh9f0ad1d_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - python 3.8.2 he5300dc_7_cpython
        - python_abi 3.8 1_cp38
        - r-askpass 1.1 r40hcdcec82_2
        - r-base 4.0.0 hdca8982_3
        - r-brew 1.0_6 r40h6115d3f_1003
        - r-circlize 0.4.9 r40h6115d3f_1
        - r-clue 0.3_57 r40h516909a_2
        - r-cluster 2.1.0 r40h9bbef5b_3
        - r-colorspace 1.4_1 r40hcdcec82_2
        - r-crayon 1.3.4 r40h6115d3f_1003
        - r-curl 4.3 r40hcdcec82_1
        - r-digest 0.6.25 r40h0357c0b_2
        - r-eulerr 6.1.0 r40h51c796c_2
        - r-evaluate 0.14 r40h6115d3f_2
        - r-gensa 1.1.7 r40hc99cbb1_1004
        - r-getoptlong 0.1.8 r40h6115d3f_1
        - r-globaloptions 0.1.1 r40_1
        - r-glue 1.4.0 r40hcdcec82_1
        - r-highr 0.8 r40h6115d3f_2
        - r-httr 1.4.1 r40h6115d3f_2
        - r-jsonlite 1.6.1 r40hcdcec82_1
        - r-knitr 1.28 r40h6115d3f_1
        - r-magrittr 1.5 r40h6115d3f_1003
        - r-markdown 1.1 r40hcdcec82_1
        - r-matrixstats 0.56.0 r40hcdcec82_1
        - r-mclust 5.4.6 r40hbf399a0_1
        - r-microbenchmark 1.4_7 r40hcdcec82_1
        - r-mime 0.9 r40hcdcec82_1
        - r-openssl 1.4.1 r40he5c4762_1
        - r-png 0.1_7 r40hcdcec82_1004
        - r-polyclip 1.10_0 r40h0357c0b_2
        - r-polylabelr 0.2.0 r40h0357c0b_1
        - r-r6 2.4.1 r40h6115d3f_1
        - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
        - r-rcpp 1.0.4.6 r40h0357c0b_1
        - r-rcpparmadillo 0.9.870.2.0 r40h51c796c_1
        - r-rjson 0.2.20 r40h0357c0b_1002
        - r-shape 1.4.4 r40_1003
        - r-skmeans 0.2_11 r40_1002
        - r-slam 0.1_47 r40hc57f18f_2
        - r-stringi 1.4.6 r40h0e574ca_2
        - r-stringr 1.4.0 r40h6115d3f_2
        - r-sys 3.3 r40hcdcec82_1
        - r-xfun 0.13 r40h6115d3f_1
        - r-xml2 1.3.2 r40h0357c0b_1
        - r-yaml 2.2.1 r40hcdcec82_1
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - setuptools 46.2.0 py38h32f6830_0
        - sqlite 3.30.1 hcee41ef_0
        - tk 8.6.10 hed695b0_0
        - tktable 2.10 h555a92e_3
        - wheel 0.34.2 py_1
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.5 h516909a_0
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.4 h6597ccf_3
    run:
        - bioconductor-biocgenerics >=0.34.0,<0.35.0
        - bioconductor-complexheatmap >=2.4.0,<2.5.0
        - bioconductor-impute >=1.62.0,<1.63.0
        - libblas >=3.8.0,<4.0a0
        - libgcc-ng >=7.3.0
        - liblapack >=3.8.0,<3.9.0a0
        - libstdcxx-ng >=7.3.0
        - r-base >=4.0,<4.1.0a0
        - r-brew
        - r-circlize >=0.4.7
        - r-clue
        - r-cluster
        - r-crayon
        - r-digest
        - r-eulerr
        - r-getoptlong
        - r-globaloptions >=0.1.0
        - r-httr
        - r-knitr
        - r-markdown
        - r-matrixstats
        - r-mclust
        - r-microbenchmark
        - r-png
        - r-rcolorbrewer
        - r-rcpp >=0.11.0
        - r-skmeans
        - r-xml2
test:
    commands:
        - $R -e "library('cola')"
about:
    description: 'Subgroup classification is a basic task in genomic data analysis,
        especially for gene expression and DNA methylation data analysis. It can also
        be used to test the agreement to known clinical annotations, or to test whether
        there exist significant batch effects. The cola package provides a general
        framework for subgroup classification by consensus partitioning. It has the
        following features: 1. It modularizes the consensus partitioning processes
        that various methods can be easily integrated. 2. It provides rich visualizations
        for interpreting the results. 3. It allows running multiple methods at the
        same time and provides functionalities to straightforward compare results.
        4. It provides a new method to extract features which are more efficient to
        separate subgroups. 5. It automatically generates detailed reports for the
        complete analysis.'
    home: https://bioconductor.org/packages/3.11/bioc/html/cola.html
    license: MIT + file LICENSE
    license_file: LICENSE
    summary: A Framework for Consensus Partitioning
extra:
    copy_test_source_files: true
    final: true
