# Clustering of immune receptor repertoires

## Documentation for package ‘ClustIRR’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CDR3ab | Mock data set of complementarity determining region 3 (CDR3) sequences from the alpha and beta chains of 10,000 T cell receptors
class:clust_irr | clust_irr class
cluster_irr | Clustering of immune receptor repertoires (IRRs)
clust_irr | clust_irr class
clust_irr-class | clust_irr class
dco | Model-based differential community occupancy (DCO) analysis
detect_communities | Graph-based community detection (GCD)
get_clustirr_clust | clust_irr class
get_clustirr_clust-method | clust_irr class
get_clustirr_inputs | clust_irr class
get_clustirr_inputs-method | clust_irr class
get_graph | Get 'igraph' object from 'clust_irr' object
get_joint_graph | Create joint 'igraph' object from multiple 'clust_irr' objects
mcpas | CDR3 sequences and their matching epitopes obtained from McPAS-TCR
plot_graph | Plot ClustIRR graph
tcr3d | CDR3 sequences and their matching epitopes obtained from TCR3d
vdjdb | CDR3 sequences and their matching epitopes obtained from VDJdb