Package: chromstaR
Type: Package
Title: Combinatorial and Differential Chromatin State Analysis for
        ChIP-Seq Data
Version: 1.10.0
Author: Aaron Taudt, Maria Colome Tatche, Matthias Heinig, Minh Anh Nguyen
Maintainer: Aaron Taudt <aaron.taudt@gmail.com>
Description: This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.
Depends: R (>= 3.3), GenomicRanges, ggplot2, chromstaRData
Imports: methods, utils, grDevices, graphics, stats, foreach,
        doParallel, S4Vectors, GenomeInfoDb, IRanges, reshape2,
        Rsamtools, GenomicAlignments, bamsignals, mvtnorm
Suggests: knitr, BiocStyle, testthat, biomaRt
URL: https://github.com/ataudt/chromstaR
BugReports: https://github.com/ataudt/chromstaR/issues
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: ImmunoOncology, Software, DifferentialPeakCalling,
        HiddenMarkovModel, ChIPSeq, HistoneModification,
        MultipleComparison, Sequencing, PeakDetection, ATACSeq
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/chromstaR
git_branch: RELEASE_3_9
git_last_commit: 78fa695
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: yes
Packaged: 2019-05-03 02:10:57 UTC; biocbuild
Built: R 3.6.1; x86_64-conda_cos6-linux-gnu; 2019-08-09 05:28:46 UTC; unix
