.                       .
ChIPseeker-package      ChIP-SEQ Annotation, Visualization and
                        Comparison
annotatePeak            annotatePeak
as.GRanges              as.GRanges
as.data.frame.csAnno    as.data.frame.csAnno
covplot                 covplot
csAnno-class            Class "csAnno" This class represents the output
                        of ChIPseeker Annotation
downloadGEObedFiles     downloadGEObedFiles
downloadGSMbedFiles     downloadGSMbedFiles
dropAnno                dropAnno
enrichAnnoOverlap       enrichAnnoOverlap
enrichPeakOverlap       enrichPeakOverlap
getBioRegion            getBioRegion
getGEOInfo              getGEOInfo
getGEOgenomeVersion     getGEOgenomeVersion
getGEOspecies           getGEOspecies
getGeneAnno             getGeneAnno
getGenomicAnnotation    getGenomicAnnotation
getNearestFeatureIndicesAndDistances
                        getNearestFeatureIndicesAndDistances
getPromoters            getPromoters
getSampleFiles          getSampleFiles
getTagMatrix            getTagMatrix
info                    Information Datasets
overlap                 overlap
peakHeatmap             peakHeatmap
plotAnnoBar             plotAnnoBar method generics
plotAnnoBar.data.frame
                        plotAnnoBar.data.frame
plotAnnoPie             plotAnnoPie method generics
plotAnnoPie.csAnno      plotAnnoPie
plotAvgProf             plotAvgProf
plotAvgProf2            plotAvgProf
plotDistToTSS           plotDistToTSS method generics
plotDistToTSS.data.frame
                        plotDistToTSS.data.frame
readPeakFile            readPeakFile
seq2gene                seq2gene
show                    show method
shuffle                 shuffle
tagHeatmap              tagHeatmap
upsetplot               upsetplot method
vennpie                 vennpie method generics
vennplot                vennplot
vennplot.peakfile       vennplot.peakfile
