# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Oct 22 11:19:53 2018
# ------------------------------------------------

package:
    name: bioconductor-chipseeker
    version: 1.16.1
source:
    sha256: fe358c80a1a5f2d4ccbadcca59a23074aa5f81b681384fc1106066defa3581d6
    url:
        - http://bioconductor.org/packages/3.7/bioc/src/contrib/ChIPseeker_1.16.1.tar.gz
        - https://bioarchive.galaxyproject.org/ChIPseeker_1.16.1.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-chipseeker/bioconductor-chipseeker_1.16.1_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351_0
requirements:
    host:
        - bioconductor-annotationdbi 1.42.1 r351_0
        - bioconductor-biobase 2.40.0 r351h470a237_0
        - bioconductor-biocgenerics 0.26.0 r351_0
        - bioconductor-biocparallel 1.14.2 r351h26a2512_0
        - bioconductor-biomart 2.36.1 r351_0
        - bioconductor-biostrings 2.48.0 r351h470a237_0
        - bioconductor-delayedarray 0.6.6 r351_0
        - bioconductor-do.db 2.9 r351_3
        - bioconductor-dose 3.6.1 r351_0
        - bioconductor-enrichplot 1.0.2 r351_0
        - bioconductor-fgsea 1.6.0 r351hfc679d8_0
        - bioconductor-genomeinfodb 1.16.0 r351_0
        - bioconductor-genomeinfodbdata 1.1.0 r351_0
        - bioconductor-genomicalignments 1.16.0 r351h470a237_0
        - bioconductor-genomicfeatures 1.32.3 r351_0
        - bioconductor-genomicranges 1.32.7 r351h470a237_0
        - bioconductor-go.db 3.6.0 r351_0
        - bioconductor-gosemsim 2.6.2 r351hfc679d8_0
        - bioconductor-iranges 2.14.12 r351h470a237_0
        - bioconductor-qvalue 2.12.0 r351_0
        - bioconductor-rsamtools 1.32.3 r351hfc679d8_0
        - bioconductor-rtracklayer 1.40.6 r351h470a237_0
        - bioconductor-s4vectors 0.18.3 r351h470a237_0
        - bioconductor-summarizedexperiment 1.10.1 r351_0
        - bioconductor-txdb.hsapiens.ucsc.hg19.knowngene 3.2.2 r351_3
        - bioconductor-xvector 0.20.0 r351h470a237_0
        - bioconductor-zlibbioc 1.26.0 r351h470a237_0
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - expat 2.2.5 hfc679d8_2
        - fontconfig 2.13.1 h65d0f4c_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h5e8e0c9_1
        - glib 2.56.2 h464dc38_0
        - gmp 6.1.2 hfc679d8_0
        - graphite2 1.3.12 hfc679d8_1
        - gsl 2.2.1 h0c605f7_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_5
        - libgcc-ng 7.2.0 hdf63c60_3
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_2
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - libtiff 4.0.9 he6b73bb_2
        - libuuid 2.32.1 h470a237_2
        - libxcb 1.13 h470a237_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - pthread-stubs 0.4 h470a237_1
        - r-assertthat 0.2.0 r351h6115d3f_1
        - r-base 3.5.1 h4fe35fd_1
        - r-bh 1.66.0_1 r351_1
        - r-bindr 0.1.1 r351h6115d3f_1
        - r-bindrcpp 0.2.2 r351h9d2a408_1
        - r-bit 1.1_12 r351h470a237_2
        - r-bit64 0.9_7 r351hc070d10_0
        - r-bitops 1.0_6 r351hc070d10_2
        - r-blob 1.1.1 r351_1
        - r-boot 1.3_20 r351_0
        - r-catools 1.17.1.1 r351h9d2a408_2
        - r-cli 1.0.0 r351h6115d3f_1
        - r-colorspace 1.3_2 r351hc070d10_2
        - r-cowplot 0.9.3 r351h6115d3f_1
        - r-crayon 1.3.4 r351h6115d3f_1
        - r-curl 3.2 r351hc070d10_2
        - r-data.table 1.11.4 r351hc070d10_2
        - r-dbi 1.0.0 r351h6115d3f_1
        - r-digest 0.6.18 r351hc070d10_0
        - r-dplyr 0.7.6 r351h9d2a408_1
        - r-fansi 0.3.0 r351hc070d10_0
        - r-farver 1.0 r351h9d2a408_0
        - r-fastmatch 1.1_0 r351hc070d10_3
        - r-formatr 1.5 r351h6115d3f_1
        - r-futile.logger 1.4.3 r351h6115d3f_1
        - r-futile.options 1.0.1 r351h6115d3f_0
        - r-gdata 2.18.0 r351h6115d3f_1
        - r-ggforce 0.1.2 r351h9d2a408_1
        - r-ggplot2 3.0.0 r351h6115d3f_1
        - r-ggraph 1.0.2 r351h9d2a408_2
        - r-ggrepel 0.8.0 r351h9d2a408_2
        - r-ggridges 0.5.0 r351h6115d3f_1
        - r-glue 1.3.0 r351h470a237_2
        - r-gplots 3.0.1 r351h6115d3f_1
        - r-gridbase 0.4_7 r351h6115d3f_1
        - r-gridextra 2.3 r351h6115d3f_1
        - r-gtable 0.2.0 r351h6115d3f_1
        - r-gtools 3.8.1 r351hc070d10_2
        - r-hms 0.4.2 r351h6115d3f_0
        - r-httr 1.3.1 r351h6115d3f_1
        - r-igraph 1.2.2 r351he0ffe0d_1
        - r-jsonlite 1.5 r351hc070d10_2
        - r-kernsmooth 2.23_15 r351h364d78e_2
        - r-labeling 0.3 r351h6115d3f_1
        - r-lambda.r 1.2.3 r351h6115d3f_0
        - r-lattice 0.20_35 r351hc070d10_0
        - r-lazyeval 0.2.1 r351hc070d10_2
        - r-magrittr 1.5 r351h6115d3f_1
        - r-mass 7.3_50 r351hc070d10_2
        - r-matrix 1.2_14 r351hc070d10_2
        - r-matrixstats 0.54.0 r351hc070d10_0
        - r-memoise 1.1.0 r351h6115d3f_1
        - r-mgcv 1.8_24 r351hc070d10_2
        - r-mime 0.5 r351hc070d10_2
        - r-munsell 0.5.0 r351h6115d3f_1
        - r-nlme 3.1_137 r351h364d78e_0
        - r-openssl 1.0.2 r351h9f97512_0
        - r-pillar 1.3.0 r351h6115d3f_0
        - r-pkgconfig 2.0.2 r351h6115d3f_1
        - r-plogr 0.2.0 r351h6115d3f_1
        - r-plotrix 3.7_3 r351h6115d3f_0
        - r-plyr 1.8.4 r351h9d2a408_2
        - r-prettyunits 1.0.2 r351h6115d3f_1
        - r-progress 1.2.0 r351h6115d3f_2
        - r-purrr 0.2.5 r351hc070d10_1
        - r-r6 2.2.2 r351h6115d3f_1
        - r-rcolorbrewer 1.1_2 r351h6115d3f_1
        - r-rcpp 0.12.17 r351h9d2a408_2
        - r-rcurl 1.95_4.11 r351h86b9717_2
        - r-reshape2 1.4.3 r351h9d2a408_2
        - r-rlang 0.2.2 r351h470a237_0
        - r-rsqlite 2.1.1 r351h9d2a408_0
        - r-scales 1.0.0 r351h9d2a408_1
        - r-snow 0.4_3 r351h6115d3f_0
        - r-stringi 1.2.4 r351h9d2a408_1
        - r-stringr 1.3.1 r351h6115d3f_1
        - r-tibble 1.4.2 r351hc070d10_2
        - r-tidyselect 0.2.4 r351h9d2a408_2
        - r-tweenr 1.0.0 r351h9d2a408_0
        - r-units 0.6_1 r351h9d2a408_0
        - r-upsetr 1.3.3 r351_1
        - r-utf8 1.1.4 r351hc070d10_0
        - r-viridis 0.5.1 r351h6115d3f_1
        - r-viridislite 0.3.0 r351h6115d3f_1
        - r-withr 2.1.2 r351h6115d3f_0
        - r-xml 3.98_1.16 r351hc070d10_0
        - readline 7.0 haf1bffa_1
        - tk 8.6.8 ha92aebf_0
        - udunits2 2.2.27.6 h3a4f0e9_1
        - wget 1.19.5 h1ad7b7a_0
        - xorg-kbproto 1.0.7 h470a237_2
        - xorg-libice 1.0.9 h470a237_4
        - xorg-libsm 1.2.3 h8c8a85c_0
        - xorg-libx11 1.6.6 h470a237_0
        - xorg-libxau 1.0.8 h470a237_6
        - xorg-libxdmcp 1.1.2 h470a237_7
        - xorg-libxext 1.3.3 h470a237_4
        - xorg-libxrender 0.9.10 h470a237_2
        - xorg-libxt 1.1.5 h470a237_2
        - xorg-renderproto 0.11.1 h470a237_2
        - xorg-xextproto 7.3.0 h470a237_2
        - xorg-xproto 7.0.31 h470a237_7
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-annotationdbi >=1.42.1,<1.44.0
        - bioconductor-biocgenerics >=0.26.0,<0.28.0
        - bioconductor-enrichplot >=1.0.2,<1.2.0
        - bioconductor-genomeinfodb >=1.16.0,<1.18.0
        - bioconductor-genomicfeatures >=1.32.2,<1.34.0
        - bioconductor-genomicranges >=1.32.7,<1.34.0
        - bioconductor-iranges >=2.14.12,<2.16.0
        - bioconductor-rtracklayer >=1.40.6,<1.42.0
        - bioconductor-s4vectors >=0.18.3,<0.20.0
        - bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.2,<3.4.0
        - r-base >=3.5.1,<3.5.2.0a0
        - r-boot
        - r-dplyr
        - r-ggplot2 >=2.2.0
        - r-gplots
        - r-gridbase
        - r-gtools
        - r-magrittr
        - r-plotrix
        - r-rcolorbrewer
        - r-upsetr
test:
    commands:
        - $R -e "library('ChIPseeker')"
about:
    home: http://bioconductor.org/packages/3.7/bioc/html/ChIPseeker.html
    license: Artistic-2.0
    summary: This package implements functions to retrieve the nearest genes around
        the peak, annotate genomic region of the peak, statstical methods for estimate
        the significance of overlap among ChIP peak data sets, and incorporate GEO
        database for user to compare the own dataset with those deposited in database.
        The comparison can be used to infer cooperative regulation and thus can be
        used to generate hypotheses. Several visualization functions are implemented
        to summarize the coverage of the peak experiment, average profile and heatmap
        of peaks binding to TSS regions, genomic annotation, distance to TSS, and
        overlap of peaks or genes.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:chipseeker
