citHeader("To cite the package CellNOptR in publications please use:")

#    C Terfve, T Cokelaer, A MacNamara, D Henriques, E Goncalves, MK Morris, M van Iersel, DA Lauffenburger, J Saez-Rodriguez. CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms. BMC Systems Biology, 2012, 6:133
#
#You may also want a reference to the manual:
#
#    C Terfve, T Cokelaer, A MacNamara, J Saez-Rodriguez. Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data with CellNOptR. R package version 1.7.5, 2013
#


# paper reference
citEntry(
    entry="Article",
    title = "CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms.",
    author =  "Camille Terfve, Thomas Cokelaer, Aidan MacNamara, David Henriques, Emanuel Goncalves, Melody K Morris, Martin van Iersel, Douglas A Lauffenburger, Julio Saez-Rodriguez",
    year = "2012",
    journal="BMC Systems Biology",
    volume=1,
    number=133,
    textVersion= "C Terfve, T Cokelaer, A MacNamara, D Henriques, E Goncalves, MK Morris, M van Iersel, DA Lauffenburger, J Saez-Rodriguez. CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms. BMC Systems Biology, 2012, 6:133"
    )

# Manual reference
year <- sub(".*(2[[:digit:]]{3})-.*", "\\1", meta$Date, perl = TRUE)
authors = "Camille Terfve, Thomas Cokelaer, Aidan MacNamara, Julio Saez-Rodriguez"
citEntry(
    entry="Manual",
    title = meta$Title,
    author = authors,
    year = year,
    version=meta$Version,
    note = "R package available on http://www.bioconductor.org/packages/release/bioc/html/CellNOptR.html",
    textVersion=paste(authors, ". ", meta$Title, " (", year, ")", "R package version ", meta$Version, sep="")
)
