# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jul 12 07:44:32 2023
# ------------------------------------------------

package:
  name: bioconductor-busseq
  version: 1.6.1
source:
  md5: 3623f486d083ce7f0c38903eae323c93
  url:
    - https://bioarchive.galaxyproject.org/BUSseq_1.6.1.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/BUSseq/BUSseq_1.6.1.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/BUSseq_1.6.1.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-busseq/bioconductor-busseq_1.6.1_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hf17093f_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.40 hf600244_0
    - binutils_linux-64 2.40 hbdbef99_0
    - gcc_impl_linux-64 12.3.0 he2b93b0_0
    - gcc_linux-64 12.3.0 h76fc315_0
    - gxx_impl_linux-64 12.3.0 he2b93b0_0
    - gxx_linux-64 12.3.0 h8a814eb_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.40 h41732ed_0
    - libgcc-devel_linux-64 12.3.0 h8bca6fd_0
    - libgcc-ng 13.1.0 he5830b7_0
    - libgomp 13.1.0 he5830b7_0
    - libsanitizer 12.3.0 h0f45ef3_0
    - libstdcxx-devel_linux-64 12.3.0 h8bca6fd_0
    - libstdcxx-ng 13.1.0 hfd8a6a1_0
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.1.1 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-biobase 2.60.0 r43ha9d7317_0
    - bioconductor-biocgenerics 0.46.0 r43hdfd78af_0
    - bioconductor-data-packages 20230706 hdfd78af_0
    - bioconductor-delayedarray 0.26.6 r43ha9d7317_0
    - bioconductor-genomeinfodb 1.36.1 r43hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.10 r43hdfd78af_0
    - bioconductor-genomicranges 1.52.0 r43ha9d7317_0
    - bioconductor-iranges 2.34.1 r43ha9d7317_0
    - bioconductor-matrixgenerics 1.12.2 r43hdfd78af_0
    - bioconductor-s4arrays 1.0.4 r43ha9d7317_0
    - bioconductor-s4vectors 0.38.1 r43ha9d7317_0
    - bioconductor-singlecellexperiment 1.22.0 r43hdfd78af_0
    - bioconductor-summarizedexperiment 1.30.2 r43hdfd78af_0
    - bioconductor-xvector 0.40.0 r43ha9d7317_0
    - bioconductor-zlibbioc 1.46.0 r43ha9d7317_0
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.19.1 hd590300_0
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    - curl 8.1.2 h409715c_0
    - expat 2.5.0 hcb278e6_1
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    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 13.1.0 hc4be1a9_0
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 13.1.0 hd511a9b_0
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 13.1.0 hc4be1a9_0
    - harfbuzz 7.3.0 hdb3a94d_0
    - icu 72.1 hcb278e6_0
    - jq 1.6 h36c2ea0_1000
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.20.1 h81ceb04_0
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    - lerc 4.0.0 h27087fc_0
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    - libedit 3.1.20191231 he28a2e2_2
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    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.1.0 he3cc6c4_0
    - libgcc-ng 13.1.0 he5830b7_0
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    - libgfortran5 13.1.0 h15d22d2_0
    - libglib 2.76.4 hebfc3b9_0
    - libgomp 13.1.0 he5830b7_0
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 2.1.5.1 h0b41bf4_0
    - liblapack 3.9.0 5_h92ddd45_netlib
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    - pip 23.1.2 pyhd8ed1ab_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.11.4 hab00c5b_0_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311hd4cff14_5
    - r-base 4.3.1 hfabd6f2_0
    - r-bitops 1.0_7 r43h57805ef_2
    - r-catools 1.18.2 r43ha503ecb_2
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-gplots 3.1.3 r43hc72bb7e_2
    - r-gtools 3.9.4 r43h57805ef_1
    - r-kernsmooth 2.23_22 r43h13b3f57_0
    - r-lattice 0.21_8 r43h57805ef_1
    - r-matrix 1.6_0 r43h316c678_0
    - r-matrixstats 1.0.0 r43h57805ef_1
    - r-rcurl 1.98_1.12 r43hf9611b0_2
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 68.0.0 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.11.8 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.6 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_0
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.2 hfc55251_7
  run:
    - bioconductor-s4vectors >=0.38.0,<0.39.0
    - bioconductor-singlecellexperiment >=1.22.0,<1.23.0
    - bioconductor-summarizedexperiment >=1.30.0,<1.31.0
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - libstdcxx-ng >=12
    - r-base >=4.3,<4.4.0a0
    - r-gplots
test:
  commands:
    - $R -e "library('BUSseq')"
about:
  description: BUSseq R package fits an interpretable Bayesian hierarchical model---the
    Batch Effects Correction with Unknown Subtypes for scRNA seq Data (BUSseq)---to
    correct batch effects in the presence of unknown cell types. BUSseq is able to
    simultaneously correct batch effects, clusters cell types, and takes care of the
    count data nature, the overdispersion, the dropout events, and the cell-specific
    sequencing depth of scRNA-seq data. After correcting the batch effects with BUSseq,
    the corrected value can be used for downstream analysis as if all cells were sequenced
    in a single batch. BUSseq can integrate read count matrices obtained from different
    scRNA-seq platforms and allow cell types to be measured in some but not all of
    the batches as long as the experimental design fulfills the conditions listed
    in our manuscript.
  home: https://bioconductor.org/packages/3.17/bioc/html/BUSseq.html
  license: Artistic-2.0
  summary: Batch Effect Correction with Unknow Subtypes for scRNA-seq data
extra:
  copy_test_source_files: true
  final: true
