{
  "channels": [
    "file:///opt/host-conda-bld",
    "https://conda.anaconda.org/conda-forge",
    "https://conda.anaconda.org/bioconda",
    "https://repo.anaconda.com/pkgs/main",
    "https://conda.anaconda.org/conda-forge",
    "https://conda.anaconda.org/bioconda",
    "https://repo.anaconda.com/pkgs/main"
  ],
  "conda_build_version": "3.24.0",
  "conda_version": "23.3.1",
  "description": "BUSseq R package fits an interpretable Bayesian hierarchical model---the Batch Effects Correction with Unknown Subtypes for scRNA seq Data (BUSseq)---to correct batch effects in the presence of unknown cell types. BUSseq is able to simultaneously correct batch effects, clusters cell types, and takes care of the count data nature, the overdispersion, the dropout events, and the cell-specific sequencing depth of scRNA-seq data. After correcting the batch effects with BUSseq, the corrected value can be used for downstream analysis as if all cells were sequenced in a single batch. BUSseq can integrate read count matrices obtained from different scRNA-seq platforms and allow cell types to be measured in some but not all of the batches as long as the experimental design fulfills the conditions listed in our manuscript.",
  "env_vars": {
    "CIO_TEST": "<not set>"
  },
  "extra": {
    "copy_test_source_files": true,
    "final": true
  },
  "home": "https://bioconductor.org/packages/3.17/bioc/html/BUSseq.html",
  "identifiers": [],
  "keywords": [],
  "license": "Artistic-2.0",
  "root_pkgs": [
    "rich 13.4.2 pyhd8ed1ab_0",
    "keyutils 1.6.1 h166bdaf_0",
    "patchelf 0.17.2 h58526e2_0",
    "platformdirs 3.8.0 pyhd8ed1ab_0",
    "wheel 0.40.0 pyhd8ed1ab_0",
    "libedit 3.1.20191231 he28a2e2_2",
    "libgcc-ng 13.1.0 he5830b7_0",
    "libnsl 2.0.0 h7f98852_0",
    "setuptools 68.0.0 pyhd8ed1ab_0",
    "nbformat 5.9.0 pyhd8ed1ab_0",
    "libtiff 4.5.1 h8b53f26_0",
    "git 2.41.0 pl5321h86e50cf_0",
    "more-itertools 9.1.0 pyhd8ed1ab_0",
    "typing-extensions 4.7.0 hd8ed1ab_0",
    "ncurses 6.4 hcb278e6_0",
    "yaml-cpp 0.7.0 h27087fc_2",
    "dataclasses 0.8 pyhc8e2a94_3",
    "libuuid 2.38.1 h0b41bf4_0",
    "backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0",
    "charset-normalizer 3.1.0 pyhd8ed1ab_0",
    "libgomp 13.1.0 he5830b7_0",
    "libexpat 2.5.0 hcb278e6_1",
    "xorg-libxau 1.0.11 hd590300_0",
    "wcwidth 0.2.6 pyhd8ed1ab_0",
    "glob2 0.7 py_0",
    "pygments 2.15.1 pyhd8ed1ab_0",
    "python-dateutil 2.8.2 pyhd8ed1ab_0",
    "c-ares 1.19.1 hd590300_0",
    "libwebp-base 1.3.1 hd590300_0",
    "attrs 23.1.0 pyh71513ae_1",
    "reproc 14.2.4 h0b41bf4_0",
    "filelock 3.12.2 pyhd8ed1ab_0",
    "backports 1.0 pyhd8ed1ab_3",
    "lcms2 2.15 haa2dc70_1",
    "traitlets 5.9.0 pyhd8ed1ab_0",
    "perl 5.32.1 2_h7f98852_perl5",
    "libnghttp2 1.52.0 h61bc06f_0",
    "libsqlite 3.42.0 h2797004_0",
    "toolz 0.12.0 pyhd8ed1ab_0",
    "defusedxml 0.7.1 pyhd8ed1ab_0",
    "libxcb 1.15 h0b41bf4_0",
    "pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0",
    "icu 72.1 hcb278e6_0",
    "pluggy 1.2.0 pyhd8ed1ab_0",
    "tomli 2.0.1 pyhd8ed1ab_0",
    "pcre2 10.40 hc3806b6_0",
    "prompt-toolkit 3.0.38 pyha770c72_0",
    "sniffio 1.3.0 pyhd8ed1ab_0",
    "typing_extensions 4.7.0 pyha770c72_0",
    "exceptiongroup 1.1.1 pyhd8ed1ab_0",
    "anyio 3.7.0 pyhd8ed1ab_1",
    "freetype 2.12.1 hca18f0e_1",
    "pkginfo 1.9.6 pyhd8ed1ab_0",
    "curl 8.1.2 h409715c_0",
    "pip 23.1.2 pyhd8ed1ab_0",
    "conda-index 0.2.3 pyhd8ed1ab_0",
    "patch 2.7.6 h7f98852_1002",
    "boltons 23.0.0 pyhd8ed1ab_0",
    "json5 0.9.14 pyhd8ed1ab_0",
    "importlib-metadata 6.7.0 pyha770c72_0",
    "pysocks 1.7.1 pyha2e5f31_6",
    "ripgrep 13.0.0 h2f28480_2",
    "libcurl 8.1.2 h409715c_0",
    "jsonpatch 1.32 pyhd8ed1ab_0",
    "yaml 0.2.5 h7f98852_2",
    "soupsieve 2.3.2.post1 pyhd8ed1ab_0",
    "zipp 3.15.0 pyhd8ed1ab_0",
    "python-fastjsonschema 2.17.1 pyhd8ed1ab_0",
    "libstdcxx-ng 13.1.0 hfd8a6a1_0",
    "six 1.16.0 pyh6c4a22f_0",
    "readline 8.2 h8228510_1",
    "bzip2 1.0.8 h7f98852_4",
    "pybind11-abi 4 hd8ed1ab_3",
    "libpng 1.6.39 h753d276_0",
    "libev 4.33 h516909a_1",
    "libjpeg-turbo 2.1.5.1 h0b41bf4_0",
    "markdown-it-py 3.0.0 pyhd8ed1ab_0",
    "colorama 0.4.6 pyhd8ed1ab_0",
    "libzlib 1.2.13 hd590300_5",
    "libffi 3.4.2 h7f98852_5",
    "click 8.1.3 unix_pyhd8ed1ab_2",
    "conda-pack 0.7.0 pyh6c4a22f_0",
    "ld_impl_linux-64 2.40 h41732ed_0",
    "openjpeg 2.5.0 hfec8fc6_2",
    "mdurl 0.1.0 pyhd8ed1ab_0",
    "anaconda-project 0.11.1 pyhd8ed1ab_0",
    "xorg-libxdmcp 1.1.3 h7f98852_0",
    "openssl 3.1.1 hd590300_1",
    "clyent 1.2.2 py_1",
    "_openmp_mutex 4.5 2_gnu",
    "pycparser 2.21 pyhd8ed1ab_0",
    "gettext 0.21.1 h27087fc_0",
    "zstd 1.5.2 h3eb15da_6",
    "libsolv 0.7.24 hfc55251_1",
    "libiconv 1.17 h166bdaf_0",
    "xz 5.2.6 h166bdaf_0",
    "libxml2 2.11.4 h0d562d8_0",
    "certifi 2023.5.7 pyhd8ed1ab_0",
    "lzo 2.10 h516909a_1000",
    "libssh2 1.11.0 h0841786_0",
    "liblief 0.12.3 h27087fc_0",
    "requests-toolbelt 1.0.0 pyhd8ed1ab_0",
    "tk 8.6.12 h27826a3_0",
    "lz4-c 1.9.4 hcb278e6_0",
    "pytz 2023.3 pyhd8ed1ab_0",
    "packaging 23.1 pyhd8ed1ab_0",
    "ca-certificates 2023.5.7 hbcca054_0",
    "prompt_toolkit 3.0.38 hd8ed1ab_0",
    "jsonpointer 2.0 py_0",
    "tini 0.19.0 h166bdaf_1",
    "libarchive 3.6.2 h039dbb9_1",
    "fmt 9.1.0 h924138e_0",
    "conda-package-handling 2.0.2 pyh38be061_0",
    "reproc-cpp 14.2.4 hcb278e6_0",
    "lerc 4.0.0 h27087fc_0",
    "conda-package-streaming 0.8.0 pyhd8ed1ab_0",
    "joblib 1.3.0 pyhd8ed1ab_1",
    "libmamba 1.4.2 hcea66bb_0",
    "tzdata 2023c h71feb2d_0",
    "importlib_resources 5.12.0 pyhd8ed1ab_0",
    "tqdm 4.65.0 pyhd8ed1ab_1",
    "su-exec 0.2 h166bdaf_1003",
    "libdeflate 1.18 h0b41bf4_0",
    "pthread-stubs 0.4 h36c2ea0_1001",
    "watchgod 0.8.2 pyhd8ed1ab_0",
    "pyopenssl 23.2.0 pyhd8ed1ab_1",
    "krb5 1.20.1 h81ceb04_0",
    "_libgcc_mutex 0.1 conda_forge",
    "boa 0.15.1 pyhd8ed1ab_0",
    "xorg-xproto 7.0.31 h7f98852_1007",
    "mamba 1.4.2 py38haad2881_0",
    "argh 0.26.2 pyh9f0ad1d_1002",
    "containers-common 0.31.1 ha770c72_0",
    "click-repl 0.2.0 pyhd8ed1ab_0",
    "psutil 5.9.5 py38h1de0b5d_0",
    "yarl 1.9.2 py38h01eb140_0",
    "xorg-libxext 1.3.4 h0b41bf4_2",
    "markdown 3.4.3 pyhd8ed1ab_0",
    "libsodium 1.0.18 h36c2ea0_1",
    "gitdb2 3.0.2 py_0",
    "brotlipy 0.7.0 py38h0a891b7_1005",
    "cryptography 41.0.1 py38hcdda232_0",
    "xorg-libx11 1.8.6 h8ee46fc_0",
    "involucro 1.1.2 ha8f183a_0",
    "libgfortran-ng 13.1.0 h69a702a_0",
    "conda 23.3.1 py38h578d9bd_0",
    "brotli-python 1.0.9 py38hfa26641_9",
    "py-lief 0.12.3 py38hfa26641_0",
    "gidgethub 3.0.0 py_0",
    "libgfortran5 13.1.0 h15d22d2_0",
    "celery 5.3.1 pyhd8ed1ab_0",
    "termcolor 1.1.0 pyhd8ed1ab_3",
    "font-ttf-inconsolata 3.000 h77eed37_0",
    "pixman 0.40.0 h36c2ea0_0",
    "fonts-conda-forge 1 0",
    "ruamel_yaml 0.15.80 py38h0a891b7_1008",
    "sphinxcontrib-applehelp 1.0.4 pyhd8ed1ab_0",
    "libtool 2.4.7 h27087fc_0",
    "numpy 1.19.5 py38h8246c76_3",
    "pyaml 17.12.1 py_0",
    "tabulate 0.9.0 pyhd8ed1ab_1",
    "xorg-xextproto 7.3.0 h0b41bf4_1003",
    "font-ttf-source-code-pro 2.038 h77eed37_0",
    "font-ttf-ubuntu 0.83 hab24e00_0",
    "idna 2.8 py38_1000",
    "gtk2 2.24.33 h90689f9_2",
    "deprecated 1.2.14 pyh1a96a4e_0",
    "xorg-libxrender 0.9.11 hd590300_0",
    "jsonschema 3.2.0 pyhd8ed1ab_3",
    "zstandard 0.19.0 py38ha98ab4e_2",
    "fontconfig 2.14.2 h14ed4e7_0",
    "cairo 1.16.0 hbbf8b49_1016",
    "python-libarchive-c 4.0 py38h578d9bd_2",
    "zlib 1.2.13 hd590300_5",
    "snowballstemmer 2.2.0 pyhd8ed1ab_0",
    "smmap2 3.0.1 py_0",
    "chardet 3.0.4 py38h924ce5b_1008",
    "libwebp 1.3.1 hbf2b3c1_0",
    "conda-verify 3.1.1 py38h578d9bd_1006",
    "atk-1.0 2.38.0 hd4edc92_1",
    "sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2",
    "backoff 1.6.0 py_1",
    "anaconda-client 1.6.14 py_0",
    "click-didyoumean 0.3.0 pyhd8ed1ab_0",
    "aiosignal 1.3.1 pyhd8ed1ab_0",
    "libglib 2.76.3 hebfc3b9_0",
    "click-plugins 1.1.1 py_0",
    "pyjwt 2.7.0 pyhd8ed1ab_0",
    "galaxy-lib 19.5.2 pyh864c0ab_1",
    "graphviz 8.0.5 h28d9a01_0",
    "xorg-libsm 1.2.4 h7391055_0",
    "giflib 5.2.1 h0b41bf4_3",
    "diskcache 5.6.1 pyhd8ed1ab_0",
    "alabaster 0.7.13 pyhd8ed1ab_0",
    "appdirs 1.4.4 pyh9f0ad1d_0",
    "async-timeout 4.0.2 pyhd8ed1ab_0",
    "regex 2022.7.9 py38h0a891b7_0",
    "pango 1.50.14 heaa33ce_1",
    "pyyaml 6.0 py38h0a891b7_5",
    "sphinxcontrib-jsmath 1.0.1 py_0",
    "xorg-libice 1.1.1 hd590300_0",
    "multidict 6.0.4 py38h1de0b5d_0",
    "expat 2.5.0 hcb278e6_1",
    "pillow 10.0.0 py38h885162f_0",
    "libblas 3.9.0 17_linux64_openblas",
    "cachetools 3.0.0 py_0",
    "harfbuzz 7.3.0 hdb3a94d_0",
    "gdk-pixbuf 2.42.10 h6b639ba_2",
    "uritemplate 4.1.1 pyhd8ed1ab_0",
    "pynacl 1.5.0 py38h0a891b7_2",
    "kombu 5.3.1 py38h578d9bd_0",
    "graphite2 1.3.13 h58526e2_1001",
    "babel 2.12.1 pyhd8ed1ab_1",
    "aiofiles 0.8.0 pyhd8ed1ab_0",
    "markupsafe 2.0.1 py38h497a2fe_1",
    "pycosat 0.6.4 py38h0a891b7_1",
    "ruamel.yaml.clib 0.2.7 py38h1de0b5d_1",
    "aiohttp-session 2.7.0 py_0",
    "imagesize 1.4.1 pyhd8ed1ab_0",
    "python_abi 3.8 3_cp38",
    "sphinx 5.1.1 pyhd8ed1ab_1",
    "libgd 2.3.3 hfa28ad5_6",
    "python 3.8.17 he550d4f_0_cpython",
    "libopenblas 0.3.23 pthreads_h80387f5_0",
    "python-tzdata 2023.3 pyhd8ed1ab_0",
    "jinja2 2.11.3 pyhd8ed1ab_2",
    "fribidi 1.0.10 h36c2ea0_0",
    "libmambapy 1.4.2 py38h7fa060d_0",
    "aiohttp-security 0.4.0 py_0",
    "pandas 1.4.4 py38h47df419_0",
    "beautifulsoup4 4.8.2 py38h32f6830_1",
    "liblapack 3.9.0 17_linux64_openblas",
    "libdevmapper 2.02.187 h7f98852_1",
    "librsvg 2.56.1 h98fae49_0",
    "libcblas 3.9.0 17_linux64_openblas",
    "sphinxcontrib-devhelp 1.0.2 py_0",
    "wrapt 1.15.0 py38h1de0b5d_0",
    "skopeo 1.11.2 he5cbd37_0",
    "requests 2.22.0 py38_1",
    "xorg-renderproto 0.11.1 h7f98852_1002",
    "jupyter_core 5.3.0 py38h578d9bd_0",
    "gitpython 3.0.8 py_0",
    "aiohttp-jinja2 1.1.2 py_0",
    "yaspin 2.0.0 pyhd8ed1ab_0",
    "gpgme 1.18.0 h27087fc_0",
    "tornado 6.3.2 py38h01eb140_0",
    "docutils 0.19 py38h578d9bd_1",
    "libaio 0.3.113 h166bdaf_0",
    "conda-forge-pinning 2023.05.06.13.08.41 hd8ed1ab_0",
    "sphinx-autodoc-typehints 1.19.2 pyhd8ed1ab_0",
    "libgpg-error 1.47 h71f35ed_0",
    "conda-build 3.24.0 py38h578d9bd_1",
    "libassuan 2.5.6 h59595ed_0",
    "frozenlist 1.3.3 py38h0a891b7_0",
    "amqp 5.1.1 pyhd8ed1ab_0",
    "vine 5.0.0 pyhd8ed1ab_1",
    "font-ttf-dejavu-sans-mono 2.37 hab24e00_0",
    "aiohttp 3.8.4 py38h01eb140_1",
    "sphinxcontrib-qthelp 1.0.3 py_0",
    "gts 0.7.6 h977cf35_4",
    "sphinxcontrib-htmlhelp 2.0.1 pyhd8ed1ab_0",
    "fonts-conda-ecosystem 1 0",
    "billiard 4.1.0 py38h01eb140_0",
    "urllib3 1.25.11 py_0",
    "pygithub 1.59.0 pyhd8ed1ab_0",
    "xorg-kbproto 1.0.7 h7f98852_1002",
    "aioftp 0.12.0 py_0",
    "smmap 5.0.0 pyhd8ed1ab_0",
    "pyrsistent 0.19.3 py38h1de0b5d_0",
    "networkx 2.8.8 pyhd8ed1ab_0",
    "future 0.18.3 pyhd8ed1ab_0",
    "cffi 1.15.1 py38h4a40e3a_3",
    "colorlog 4.8.0 py38h578d9bd_2",
    "ruamel.yaml 0.17.32 py38h01eb140_0",
    "backports.zoneinfo 0.2.1 py38h0a891b7_7"
  ],
  "summary": "Batch Effect Correction with Unknow Subtypes for scRNA-seq data",
  "tags": []
}