# Batch Effect Correction with Unknow Subtypes for scRNA-seq data

## Documentation for package ‘BUSseq’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BUSseq-package | Batch Effect Correction with Unknow Subtypes for scRNA-seq data
baseline_expression_values | Obtain the Log-Scale Baseline Expression Levels from the Output of the 'BUSseq_MCMC' Function
BIC_BUSseq | Obtain BIC from the Output of the 'BUSseq_MCMC' Function
BUSseq | Batch Effect Correction with Unknow Subtypes for scRNA-seq data
BUSseqfits_example | An external example of the output of the 'BUSseq_MCMC'
BUSseq_MCMC | Condcut MCMC sampling and posterior inference for the BUSseq Model
celltypes | Obtain the Cell-type Indicators from the Output of the 'BUSseq_MCMC' Function
celltype_effects | Obtain the Cell-type Effects from the Output of the 'BUSseq_MCMC' Function
celltype_mean_expression | Obtain the Cell-Type-Specific Mean Expression Levels from the Output of the 'BUSseq_MCMC' Function
cell_effect_values | Obtain the cell-specific size effects from the Output of the 'BUSseq_MCMC' Function
corrected_read_counts | Generate the Corrected Read Count Matrix within the Output of the 'BUSseq_MCMC'
dropout_coefficient_values | Obtain the Coefficients of the Logistic Regression for the Dropout Events from the Output of the 'BUSseq_MCMC' Function
heatmap_data_BUSseq | Draw the Heatmap of the Log-scale Read Count Data for the Output of the 'BUSseq_MCMC' Function
imputed_read_counts | Obtain the Imputed Read Count Matrix from the Output of the 'BUSseq_MCMC' Function
intrinsic_genes_BUSseq | Obtain the Intrinsic Gene Indicators from the Output of the 'BUSseq_MCMC' Function
location_batch_effects | Obtain the Location Batch Effects from the Output of the 'BUSseq_MCMC' Function
overdispersions | Obtain the Overdispersion Parameters from the Output of the 'BUSseq_MCMC' Function
raw_read_counts | Obtain the Raw Read Count Matrix from the Output of the 'BUSseq_MCMC' Function