BIC_BUS                 Obtain BIC form the output by BUSgibbs
BUScorrect-package      Batch Effects Correction with Unknown Subtypes
BUSexample_data         A simulated data set
BUSgibbs                Batch Effects Correction and Subtype Discovery
                        using Gibbs Sampler
IG_index                Obtain the intrinsic gene indices
Subtypes                Obtain the subtype indicators from the output
                        by 'BUSgibbs'
adjusted_values         Obtain adjusted expression values from the
                        output by BUSgibbs
baseline_expression_values
                        Obtain the baseline expression values from the
                        output by BUSgibbs
calculate_EPSR_gamma    Calculate the estimated potential scale
                        reduction factors (EPSR factors) for location
                        batch effects
calculate_EPSR_mu       Calculate the estimated potential scale
                        reduction factors (EPSR factors) for subtype
                        effects
calculate_EPSR_sigma_sq
                        Calculate the estimated potential scale
                        reduction factors (EPSR factors) for the
                        variances of expression values
estimate_IG_indicators
                        Estimate the intrinsic gene indicators
location_batch_effects
                        Obtain the location batch effects from the
                        output by BUSgibbs
postprob_DE             Calculate the posterior probability of being
                        differentially expressed
postprob_DE_thr_fun     Select the the posterior probability threshold
                        to control the false discovery rate
print.BUSfits           Print the output by BUSgibbs
scale_batch_effects     Obtain the scale batch effects from the output
                        by 'BUSgibbs'
subtype_effects         Obtain the subtype effects from the output by
                        'BUSgibbs'
summary.BUSfits         Summary the output by 'BUSgibbs'
visualize_data          Visualize the gene expression data from
                        multiple batches
