biovizBase-package	biovizBase-package
addStepping	addStepping-method
addStepping,GenomicRanges-method	addStepping-method
biovizBase	biovizBase-package
blind.pal.info	colorBlindSafePal
brewer.pal.blind.info	colorBlindSafePal
colorBlindSafePal	colorBlindSafePal
containLetters	containLetters
CRC	CRC
crc.gr	CRC
crc1.GeRL	crc1.GeRL
crunch	crunch-method
crunch,BamFile-method	crunch-method
crunch,EnsDb-method	crunch-method
crunch,GAlignments-method	crunch-method
crunch,TxDb-method	crunch-method
darned_hg19_subset500	darned_hg19_subset500
dichromat.pal.blind.info	colorBlindSafePal
estimateCoverage	estimateCoverage-method
estimateCoverage,BamFile-method	estimateCoverage-method
flatGrl	flatGrl
GCcontent	GCcontent
genBlindPalInfo	colorBlindSafePal
genBrewerBlindPalInfo	colorBlindSafePal
genDichromatPalInfo	colorBlindSafePal
genesymbol	genesymbol
getBioColor	getBioColor
getFormalNames	getFormalNames
getGaps	getGaps
getGaps,GRanges-method	getGaps
getIdeoGR	getIdeoGR
getIdeogram	getIdeogram
getScale	getScale
getXLab	labs
getXLab,GAlignments-method	labs
getXLab,GRanges-method	labs
getXLab,GRangesList-method	labs
getXLab-method	labs
getXScale	scale
getXScale,GRanges-method	scale
getYLab	labs
getYLab,TxDb-method	labs
hg19Ideogram	hg19Ideogram
hg19IdeogramCyto	hg19IdeogramCyto
hg19sub	CRC
ideo	ideo
ideoCyto	ideoCyto
isIdeogram	isIdeogram
isJunctionRead	isMatchedWithModel
isMatchedWithModel	isMatchedWithModel
isSimpleIdeogram	isSimpleIdeogram
is_coord_genome	transform
is_coord_truncate_gaps	shrinkageFun-method
maxGap	maxGap-method
maxGap,GenomicRanges-method	maxGap-method
mold	mold-method
mold,eSet-method	mold-method
mold,ExpressionSet-method	mold-method
mold,GRanges-method	mold-method
mold,GRangesList-method	mold-method
mold,IRanges-method	mold-method
mold,matrix-method	mold-method
mold,RangedSummarizedExperiment-method	mold-method
mold,Rle-method	mold-method
mold,RleList-method	mold-method
mold,Seqinfo-method	mold-method
mold,SummarizedExperiment-method	mold-method
mold,Views-method	mold-method
mold,VRanges-method	mold-method
mut.gr	CRC
parseArgsForAes	aes-utils
parseArgsForNonAes	aes-utils
pileupAsGRanges	pileupAsGRanges
pileupGRangesAsVariantTable	pileupGRangesAsVariantTable
plotColorLegend	plotColorLegend
showColor	showColor
shrinkageFun	shrinkageFun-method
shrinkageFun,GenomicRanges-method	shrinkageFun-method
shrinkageFun,IRanges-method	shrinkageFun-method
splitByFacets	splitByFacets-method
splitByFacets,GRanges,formula-method	splitByFacets-method
splitByFacets,GRanges,GRanges-method	splitByFacets-method
splitByFacets,GRanges,missing-method	splitByFacets-method
splitByFacets,GRanges,NULL-method	splitByFacets-method
strip_formula_dots	strip_formula_dots
subsetArgsByFormals	subsetArgsByFormals
transformDfToGr	transform
transformGRangesForEvenSpace	transformGRangesForEvenSpace
transformToArch	transform
transformToArch,GRanges-method	transform
transformToBarInCircle	transform
transformToCircle	transform
transformToDf	transform
transformToDf,GRanges-method	transform
transformToDf-method	transform
transformToGenome	transform
transformToGenome,GRanges-method	transform
transformToGenome,GRangesList-method	transform
transformToLinkInCircle	transform
transformToRectInCircle	transform
transformToSegInCircle	transform
