absLog10p	absLog10p
appendGmtList	appendGmtList
as.GmtList	as.GmtList
BaseIndexList-class	BaseIndexList-class
entropy	entropy
entropyDiversity	entropyDiversity
entropySpecificity	entropySpecificity
filterBySize	filterBySize
filterPmat	filterPmat
getLeadingEdgeIndexFromMatrix	getLeadingEdgeIndexFromVector
getLeadingEdgeIndexFromVector	getLeadingEdgeIndexFromVector
gini	gini
GmtList	GmtList
GmtList-class	GmtList-class
gmtlist2signedGenesets	gmtlist2signedGenesets
gsDesc	gsDesc
gsGeneCount	gsGeneCount
gsGenes	gsGenes
gsName	gsName
gsNamespace	gsNamespace
gsNamespace<-	setGsNamespace
gsSize	gsGeneCount
hasNamespace	hasNamespace
IndexList	IndexList
IndexList,list-method	IndexList
IndexList,logical-method	IndexList
IndexList,numeric-method	IndexList
IndexList-class	IndexList-class
isValidBaseIndexList	isValidBaseIndexList
isValidGmtList	isValidGmtList
isValidIndexList	isValidIndexList
isValidSignedGenesets	isValidSignedGenesets
isValidSignedIndexList	isValidSignedIndexList
matchGenes	matchGenes
matchGenes,character,character-method	matchGenes
matchGenes,character,DGEList-method	matchGenes
matchGenes,character,eSet-method	matchGenes
matchGenes,character,matrix-method	matchGenes
matchGenes,GmtList,character-method	matchGenes
matchGenes,GmtList,DGEList-method	matchGenes
matchGenes,GmtList,eSet-method	matchGenes
matchGenes,GmtList,matrix-method	matchGenes
matchGenes,SignedGenesets,character-method	matchGenes
matchGenes,SignedGenesets,DGEList-method	matchGenes
matchGenes,SignedGenesets,eSet-method	matchGenes
matchGenes,SignedGenesets,matrix-method	matchGenes
offset	offset
offset,BaseIndexList-method	offset
offset-set	offset-set
offset<-	offset-set
offset<-,IndexList,numeric-method	offset-set
offset<-,SignedIndexList,numeric-method	offset-set
prettySigNames	prettySigNames
readCurrentSignatures	readCurrentSignatures
readGmt	readGmt
readSignedGmt	readSignedGmt
sampleSpecialization	sampleSpecialization
setDescAsNamespace	setDescAsNamespace
setNamespace	setNamespace
show,GmtList-method	show-GmtList-method
show,IndexList-method	show-IndexList-method
show,SignedGenesets-method	show-SignedGenesets-method
show,SignedIndexList-method	show-SignedIndexList-method
SignedGenesets	SignedGenesets
SignedGenesets-class	SignedGenesets-class
SignedIndexList	SignedIndexList
SignedIndexList,list-method	SignedIndexList
SignedIndexList-class	SignedIndexList-class
simplifyMatrix	simplifyMatrix
uniqGenesetsByNamespace	uniqGenesetsByNamespace
valTypes	valTypes
wmwLeadingEdge	wmwLeadingEdge
wmwTest	wmwTest
wmwTest,ANY,list-method	wmwTest
wmwTest,ANY,logical-method	wmwTest
wmwTest,ANY,numeric-method	wmwTest
wmwTest,eSet,GmtList-method	wmwTest
wmwTest,eSet,list-method	wmwTest
wmwTest,eSet,logical-method	wmwTest
wmwTest,eSet,numeric-method	wmwTest
wmwTest,eSet,SignedGenesets-method	wmwTest
wmwTest,eSet,SignedIndexList-method	wmwTest
wmwTest,matrix,GmtList-method	wmwTest
wmwTest,matrix,IndexList-method	wmwTest
wmwTest,matrix,SignedGenesets-method	wmwTest
wmwTest,matrix,SignedIndexList-method	wmwTest
wmwTest,numeric,IndexList-method	wmwTest
wmwTest,numeric,SignedIndexList-method	wmwTest
wmwTestInR	wmwTestInR
[.GmtList	sub-.GmtList
[[.GmtList	sub-sub-.GmtList
