BioNet-package	BioNet-package
aggrPvals	aggrPvals
BioNet	BioNet-package
bumOptim	bumOptim
compareNetworks	compareNetworks
consensusScores	consensusScores
fbum	fbum
fbumLL	fbumLL
fdrThreshold	fdrThreshold
fitBumModel	fitBumModel
getCompScores	getCompScores
getEdgeList	getEdgeList
hist.bum	hist.bum
largestComp	largestComp
largestScoreComp	largestScoreComp
loadNetwork.sif	loadNetwork.sif
loadNetwork.tab	loadNetwork.tab
makeNetwork	makeNetwork
mapByVar	mapByVar
permutateNodes	permutateNodes
piUpper	piUpper
plot.bum	plot.bum
plot3dModule	plot3dModule
plotLLSurface	plotLLSurface
plotModule	plotModule
print.bum	print.bum
pvaluesExample	pvaluesExample
readHeinzGraph	readHeinzGraph
readHeinzTree	readHeinzTree
resamplingPvalues	resamplingPvalues
rmSelfLoops	rmSelfLoops
runFastHeinz	runFastHeinz
runHeinz	runHeinz
save3dModule	save3dModule
saveNetwork	saveNetwork
scanFDR	scanFDR
scoreFunction	scoreFunction
scoreNodes	scoreNodes
scoreOffset	scoreOffset
sortedEdgeList	sortedEdgeList
subNetwork	subNetwork
summary.bum	summary.bum
writeHeinz	writeHeinz
writeHeinzEdges	writeHeinzEdges
writeHeinzNodes	writeHeinzNodes
