Package: biodb
Title: biodb, a library and a development framework for connecting to
        chemical and biological databases
Version: 1.0.3
Authors@R: c(person("Pierrick", "Roger", email = "pierrick.roger@cea.fr", role = c("aut", "cre")),
             person("Alexis", "Delabrière", email = "delabriere@imsb.biol.ethz.ch", role = "ctb"))
Description: The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.
biocViews: Software, Infrastructure, DataImport, KEGG
Depends: R (>= 4.0)
License: AGPL-3
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr,
        rmarkdown, covr, xml2, git2r
Imports: R6, methods, chk, lgr, progress, lifecycle, XML, stringr,
        plyr, yaml, jsonlite, RCurl, Rcpp, rappdirs, stats, openssl,
        RSQLite, withr
LinkingTo: Rcpp, testthat
NeedsCompilation: yes
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Collate: 'BiodbObject.R' 'BiodbChildObject.R' 'BiodbConnBase.R'
        'BiodbConn.R' 'BiodbCompounddbConn.R' 'BiodbObserver.R'
        'BiodbConfig.R' 'BiodbConnObserver.R' 'BiodbEntry.R'
        'BiodbCsvEntry.R' 'BiodbDbInfo.R' 'BiodbDbsInfo.R'
        'BiodbDownloadable.R' 'BiodbEditable.R' 'BiodbEntryField.R'
        'BiodbMain.R' 'BiodbEntryFields.R' 'BiodbFactory.R'
        'BiodbXmlEntry.R' 'BiodbHtmlEntry.R' 'BiodbJsonEntry.R'
        'BiodbListEntry.R' 'BiodbMassdbConn.R' 'BiodbPersitentCache.R'
        'BiodbRequestScheduler.R' 'BiodbRemotedbConn.R' 'BiodbUrl.R'
        'BiodbRequest.R' 'BiodbRequestSchedulerRule.R'
        'BiodbTxtEntry.R' 'BiodbSdfEntry.R' 'BiodbSqlExpr.R'
        'BiodbSqlBinaryOp.R' 'BiodbSqlField.R' 'BiodbSqlList.R'
        'BiodbSqlLogicalOp.R' 'BiodbSqlQuery.R' 'BiodbSqlValue.R'
        'BiodbWritable.R' 'CsvFileConn.R' 'CompCsvFileConn.R'
        'CompCsvFileEntry.R' 'SqliteConn.R' 'CompSqliteConn.R'
        'CompSqliteEntry.R' 'ExtGenerator.R' 'ExtFileGenerator.R'
        'ExtConnClass.R' 'ExtCpp.R' 'ExtDefinitions.R'
        'ExtDescriptionFile.R' 'ExtEntryClass.R' 'ExtGitignore.R'
        'ExtLicense.R' 'ExtMakefile.R' 'ExtPackage.R'
        'ExtPackageFile.R' 'ExtRbuildignore.R' 'ExtReadme.R'
        'ExtTests.R' 'ExtTravisFile.R' 'ExtVignette.R' 'FileTemplate.R'
        'MassCsvFileConn.R' 'MassCsvFileEntry.R' 'MassSqliteConn.R'
        'MassSqliteEntry.R' 'Progress.R' 'Range.R' 'RcppExports.R'
        'catch-routine-registration.R' 'fcts_biodb.R' 'fcts_ext.R'
        'fcts_mass.R' 'fcts_misc.R' 'generic_tests.R' 'http_consts.R'
        'package.R' 'spec-dist.R' 'test_framework.R'
git_url: https://git.bioconductor.org/packages/biodb
git_branch: RELEASE_3_13
git_last_commit: 6025619
git_last_commit_date: 2021-05-26
Date/Publication: 2021-05-27
Packaged: 2021-05-27 16:49:51 UTC; biocbuild
Author: Pierrick Roger [aut, cre],
  Alexis Delabrière [ctb]
Maintainer: Pierrick Roger <pierrick.roger@cea.fr>
Built: R 4.1.0; x86_64-conda-linux-gnu; 2021-06-02 10:54:22 UTC; unix
