Aggregate               A Simple Aggregation Mechanism.
AnnotatedDataFrame      Class Containing Measured Variables and Their
                        Meta-Data Description.
AssayData-class         Class "AssayData"
Biobase-package         Biobase Package Overview
ExpressionSet           Class to Contain and Describe High-Throughput
                        Expression Level Assays.
MIAME                   Class for Storing Microarray Experiment
                        Information
MIAxE                   MIAxE objects
MultiSet                Class to Contain and Describe High-Throughput
                        Expression Level Assays.
NChannelSet-class       Class to contain data from multiple channel
                        array technologies
ScalarObject-class      Utility classes for length one (scalar) objects
SnpSet                  Class to Contain Objects Describing
                        High-Throughput SNP Assays.
Versioned               Class "Versioned"
VersionedBiobase        Class "VersionedBiobase"
Versions                Class "Versions"
VersionsNull            Class "VersionsNull"
abstract                Retrieve Meta-data from eSets and
                        ExpressionSets.
addVigs2WinMenu         Add Menu Items to an Existing/New Menu of
                        Window
aggregator              A Simple Class for Aggregators
annotatedDataFrameFrom
                        Methods for Function annotatedDataFrameFrom in
                        Package 'Biobase'
anyMissing              Checks if there are any missing values in an
                        object or not
assayData               Retrieve assay data from eSets and
                        ExpressionSets.
cache                   Evaluate an expression if its value is not
                        already cached.
channel                 Create a new ExpressionSet instance by
                        selecting a specific channel
channelNames            Retrieve and set channel names from object
class:characterORMIAME
                        Class to Make Older Versions Compatible
classVersion            Retrieve information about versioned classes
container               A Lockable List Structure with Constraints on
                        Content
contents                Function to retrieve contents of environments
copyEnv                 List-Environment interactions
copySubstitute          Copy Between Connections or Files with
                        Configure-Like Name-Value Substitution
createPackage           Create a Package Directory from a Template
data:aaMap              Dataset: Names and Characteristics of Amino
                        Acids
data:geneData           Sample expression matrix and phenotype
                        data.frames.
data:sample.ExpressionSet
                        Dataset of class 'ExpressionSet'
data:sample.MultiSet    Data set of class 'MultiSet'
description             Retrieve and set overall experimental
                        information eSet-like classes.
dumpPackTxt             Dump Textual Description of a Package
eSet                    Class to Contain High-Throughput Assays and
                        Experimental Metadata
esApply                 An apply-like function for ExpressionSet and
                        related structures.
exprs                   Retrieve expression data from eSets.
featureData             Retrieve information on features recorded in
                        eSet-derived classes.
featureNames            Retrieve feature and sample names from eSets.
getPkgVigs              List Vignette Files for a Package
isCurrent               Use version information to test whether class
                        is current
isUnique                Determine Unique Elements
isVersioned             Determine whether object or class contains
                        versioning information
lcSuffix                Compute the longest common prefix or suffix of
                        a string
listLen                 Lengths of list elements
makeDataPackage         Make an R package from a data object
matchpt                 Nearest neighbor search.
multiassign             Assign Values to a Names
note                    Informational Messages
notes                   Retrieve and set eSet notes.
openPDF                 Open PDF Files in a Standard Viewer
openVignette            Open a Vignette or Show Vignette Selection Menu
package.version         Report Version of a Package
phenoData               Retrieve information on experimental phenotypes
                        recorded in eSet and ExpressionSet-derived
                        classes.
protocolData            Protocol Metadata
read.AnnotatedDataFrame
                        Read and write 'AnnotatedDataFrame'
read.MIAME              Read MIAME Information into an Instance of
                        Class 'MIAME'
readExpressionSet       Read 'ExpressionSet'
reporter                Example data.frame representing reporter
                        information
reverseSplit            A function to reverse the role of names and
                        values in a list.
rowMedians              Calculates the median for each row in a matrix
rowQ                    A function to compute empirical row quantiles.
selectChannels          Create a new NChannelSet instance by selecting
                        specific channels
selectSome              Extract elements of a vector for concise
                        rendering
snpCall                 Get and retrieve SNP call and call probability
                        data.
storageMode             Retrieve or set storage mode for eSets.
strbreak                Break Character Strings to Fit Width
subListExtract          Extract the same element from the sublists of a
                        list
testBioCConnection      A function to check internet connectivity to
                        Bioconductor
updateObjectTo          Update an object to the class definition of a
                        template
updateOldESet           Update previously created eSet object to
                        current eSet structure
userQuery               A function to query the user for input
validMsg                Conditionally append result to validity message
