# BANDITS: Bayesian ANalysis of DIfferenTial Splicing

## Documentation for package ‘BANDITS’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BANDITS-package | BANDITS: Bayesian ANalysis of DIfferenTial Splicing
BANDITS | BANDITS: Bayesian ANalysis of DIfferenTial Splicing
BANDITS_data | BANDITS_data class
BANDITS_data-class | BANDITS_data class
BANDITS_test | BANDITS_test class
BANDITS_test-class | BANDITS_test class
convergence | BANDITS_test class
convergence-method | BANDITS_test class
create_data | Create a 'BANDITS_data' object
eff_len_compute | Compute the median effective length of transcripts.
filter_genes | Filter lowly abundant genes.
filter_transcripts | Filter lowly abundant transcripts.
gene | BANDITS_test class
gene-method | BANDITS_test class
gene_tr_id | Gene-transcript matching
input_data | A 'BANDITS_data' object, generated with 'create_data'
plot_precision | Plot the log-precision estimates
plot_proportions | BANDITS_test class
plot_proportions-method | BANDITS_test class
precision | Estimates for the log-precision parameter, generated with 'prior_precision'
prior_precision | Infer an informative prior for the precision
results | Results of the DTU test, generated with 'test_DTU'
show-method | BANDITS_data class
show-method | BANDITS_test class
test_DTU | Perform differential splicing
top_genes | BANDITS_test class
top_genes-method | BANDITS_test class
top_transcripts | BANDITS_test class
top_transcripts-method | BANDITS_test class
transcript | BANDITS_test class
transcript-method | BANDITS_test class